CX300349

Overview
NameCX300349
Unique NameCX300349
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length622
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP21_ORYSJ (Probable aquaporin TIP2-1 OS=Oryza sativa subsp. japonica GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 2.634e-15
Identity = 39/98 (39.80%), Postives = 59/98 (60.20%), Query Frame = 1
Query:   64 SNIQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            S ++  VME +ITF L++ +   A D +  ++G +A +A+G  V  N++ AGP +G SMNPARS GPA+ +  + G W+Y V P +G      VY  V
Sbjct:  137 SELEGVVMEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGNFAGNWVYWVGPLIGGGLAGLVYGDV 234          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP_ANTMA (Probable aquaporin TIP-type OS=Antirrhinum majus GN=DIP PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.441e-15
Identity = 41/99 (41.41%), Postives = 58/99 (58.59%), Query Frame = 1
Query:   70 IQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMVRYT 360
            IQ  VME IITF L++ +   A D +  ++G +A +A+G  V  N++ AGP +G SMNPARS GPA+ S  +   WIY   P +G     ++Y  V  T
Sbjct:  140 IQGVVMEIIITFALVYTVYATAADPKKGSLGVIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVASGDFSQNWIYWAGPLIGGALAGFIYGDVFIT 238          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP23_ARATH (Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3 PE=1 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.494e-15
Identity = 38/96 (39.58%), Postives = 58/96 (60.42%), Query Frame = 1
Query:   70 IQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            ++  VME ++TF L++ +   A D +  ++G +A +A+G  V  N++ AGP +G SMNPARS GPA+VS     +WIY V P +G      +Y  V
Sbjct:  140 VEGVVMEIVVTFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDLSQIWIYWVGPLVGGALAGLIYGDV 235          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP1_TOBAC (Probable aquaporin TIP-type RB7-5A OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 4.494e-15
Identity = 42/101 (41.58%), Postives = 61/101 (60.40%), Query Frame = 1
Query:   58 AGSN-IQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            AG N +Q  VME IITF L++ +   A D +  ++G +A +A+G  V  N++ AGP +G SMNPARS GPA+V+  +   WIY   P +G     ++Y  V
Sbjct:  135 AGLNGLQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDV 235          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP2_TOBAC (Probable aquaporin TIP-type RB7-18C OS=Nicotiana tabacum PE=2 SV=2)

HSP 1 Score: 80.4925 bits (197), Expect = 7.665e-15
Identity = 42/101 (41.58%), Postives = 60/101 (59.41%), Query Frame = 1
Query:   58 AGSN-IQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            AG N  Q  VME IITF L++ +   A D +  ++G +A +A+G  V  N++ AGP +G SMNPARS GPA+V+  +   WIY   P +G     ++Y  V
Sbjct:  135 AGLNGFQGVVMEIIITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVAGDFSQNWIYWAGPLIGGGLAGFIYGDV 235          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP22_MAIZE (Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.001e-14
Identity = 41/117 (35.04%), Postives = 64/117 (54.70%), Query Frame = 1
Query:    7 LRLLFQEKQDQFAGTLPAGSNIQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            LR +   K     G     + ++  V E +ITF L++ +   A D +  ++G +A +A+G  V  N++ AGP +G SMNPARS GPA+ ++ + G W+Y V P +G      VY  V
Sbjct:  119 LRFVTHGKAIPTHGVSGGTTELEGVVFEIVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAADFAGNWVYWVGPLIGGGLAGLVYGDV 235          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP32_ARATH (Probable aquaporin TIP3-2 OS=Arabidopsis thaliana GN=TIP3-2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.307e-14
Identity = 40/95 (42.11%), Postives = 58/95 (61.05%), Query Frame = 1
Query:   64 SNIQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVY 342
            S +   +ME I+TF L++V+   A D +  +IG +A LA+G  V  N++  GP  GASMNPAR+ GPA+V  ++   WIY V P +G    A +Y
Sbjct:  148 SELHGLLMEIILTFALVYVVYSTAIDPKRGSIGIIAPLAIGLIVGANILVGGPFDGASMNPARAFGPALVGWRWSNHWIYWVGPFIGGALAALIY 242          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP21_MAIZE (Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.708e-14
Identity = 38/98 (38.78%), Postives = 58/98 (59.18%), Query Frame = 1
Query:   64 SNIQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYNMV 351
            S ++  V E +ITF L++ +   A D +  ++G +A +A+G  V  N++ AGP +G SMNPARS GPA+ +  + G W+Y V P +G      VY  V
Sbjct:  137 SELEGVVFEVVITFALVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVAAGDFAGNWVYWVGPLVGGGLAGLVYGDV 234          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP43_ORYSJ (Probable aquaporin TIP4-3 OS=Oryza sativa subsp. japonica GN=TIP4-3 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.804e-14
Identity = 40/97 (41.24%), Postives = 54/97 (55.67%), Query Frame = 1
Query:   55 PAGSNIQAFVMEFIITFYLMFVISGVATDNR-AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVY 342
            P     +A  ME ++TF L+F +     D R A+G L  L VG  V  N++  GP +GASMNPARS GPA+ + ++   WIY V P +G      VY
Sbjct:  135 PGVGAARAVAMEAVLTFSLLFAVYATVVDRRRAVGALGPLLVGLVVGANILAGGPYSGASMNPARSFGPALAAGEWADHWIYWVGPLIGGPLAGLVY 231          
BLAST of CX300349 vs. ExPASy Swiss-Prot
Match: TIP31_ARATH (Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 6.489e-14
Identity = 41/103 (39.81%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   70 IQAFVMEFIITFYLMFVISGVATDNR--AIGELAGLAVGSTVLLNVMFAGPITGASMNPARSLGPAIVSSQYKGLWIYIVAPPLGATAGAWVYN-MVRYTDKP 369
            +   V+E I+TF L++V+     D +  ++G +A LA+G  V  N++  GP +GASMNPAR+ GPA+V  ++   WIY V P +G+   A +Y  MV  T+ P
Sbjct:  150 VNGLVLEIILTFGLVYVVYSTLIDPKRGSLGIIAPLAIGLIVGANILVGGPFSGASMNPARAFGPALVGWRWHDHWIYWVGPFIGSALAALIYEYMVIPTEPP 252          
The following BLAST results are available for this feature:
BLAST of CX300349 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
TIP21_ORYSJ2.634e-1539.80Probable aquaporin TIP2-1 OS=Oryza sativa subsp. j... [more]
TIP_ANTMA3.441e-1541.41Probable aquaporin TIP-type OS=Antirrhinum majus G... [more]
TIP23_ARATH4.494e-1539.58Aquaporin TIP2-3 OS=Arabidopsis thaliana GN=TIP2-3... [more]
TIP1_TOBAC4.494e-1541.58Probable aquaporin TIP-type RB7-5A OS=Nicotiana ta... [more]
TIP2_TOBAC7.665e-1541.58Probable aquaporin TIP-type RB7-18C OS=Nicotiana t... [more]
TIP22_MAIZE1.001e-1435.04Aquaporin TIP2-2 OS=Zea mays GN=TIP2-2 PE=2 SV=1[more]
TIP32_ARATH1.307e-1442.11Probable aquaporin TIP3-2 OS=Arabidopsis thaliana ... [more]
TIP21_MAIZE1.708e-1438.78Aquaporin TIP2-1 OS=Zea mays GN=TIP2-1 PE=2 SV=1[more]
TIP43_ORYSJ3.804e-1441.24Probable aquaporin TIP4-3 OS=Oryza sativa subsp. j... [more]
TIP31_ARATH6.489e-1439.81Aquaporin TIP3-1 OS=Arabidopsis thaliana GN=TIP3-1... [more]

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Properties
Property NameValue
Genbank descriptionC07009B01SK SaltLeaf1 Citrus clementina cDNA clone C07009B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300349 ID=CX300349; Name=CX300349; organism=Citrus clementina; type=EST; length=622bp
GGAACACTTCGGTTACTGTTTCAAGAAAAACAGGATCAGTTCGCAGGAAC
ACTTCCAGCTGGCTCCAATATTCAGGCGTTTGTGATGGAGTTCATTATCA
CCTTCTACCTCATGTTTGTCATATCCGGTGTCGCCACCGATAACAGAGCT
ATAGGCGAGCTTGCAGGTCTCGCTGTTGGTTCCACAGTGCTGCTTAATGT
CATGTTTGCCGGGCCAATAACAGGAGCATCAATGAACCCAGCAAGAAGCT
TGGGGCCAGCAATTGTATCAAGTCAGTACAAGGGTTTGTGGATATACATT
GTGGCGCCACCTCTTGGGGCAACTGCAGGGGCTTGGGTTTACAACATGGT
GAGATATACTGACAAGCCTTTGCGAGAGATTACAAAGAGTGCCTCTTTCT
TAAAGGGAGCTGGACGTTCTTAATCTCAGATGATTGGATTTGTTCCAATA
GTTAATAATTGATGGCTTCTGATTTGAGATTAGATGCTAATTCTGTGATT
TGTGTAAACTACAAGAGCCAAGAGGAGGACGCTGTTTTTTTTTTCAATGC
AAATCTTAACTATGTGTGAATGGCATGTACTGGACTTCAAAATGAAATGA
ACTATAATATATTAAAAAAAAA
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