CX300352

Overview
NameCX300352
Unique NameCX300352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length323
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.628e-29
Identity = 61/62 (98.39%), Postives = 62/62 (100.00%), Query Frame = 2 
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   63 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
[Close]
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB2A_PINSY (Chlorophyll a-b binding protein type 2 member 1A, chloroplastic OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.126e-29
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 2 
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            +AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  217 DAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFVPGK 278
[Close]
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.126e-29
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 2 
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  205 EAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.126e-29
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 2 
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  208 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.776e-29
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 2 
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  206 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.776e-29
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 2 
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  206 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 3.626e-29
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 2 
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  206 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267
[Close]
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.736e-29
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 2 
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  204 EAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265
[Close]
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.736e-29
Identity = 59/62 (95.16%), Postives = 62/62 (100.00%), Query Frame = 2 
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  207 EAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268
[Close]
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 4.736e-29
Identity = 60/62 (96.77%), Postives = 61/62 (98.39%), Query Frame = 2 
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EAFAELKVK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  206 EAFAELKVKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267
The following BLAST results are available for this feature:
BLAST of CX300352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB21_RAPSA1.628e-2998.39Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB2A_PINSY2.126e-2996.77Chlorophyll a-b binding protein type 2 member 1A, ... [more]
CB25_NICPL2.126e-2996.77Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_PEA2.126e-2996.77Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB2F_SOLLC2.776e-2996.77Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.776e-2996.77Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB27_TOBAC3.626e-2996.77Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB29_MAIZE4.736e-2995.16Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB28_PEA4.736e-2995.16Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB25_TOBAC4.736e-2996.77Chlorophyll a-b binding protein 50, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07009B04SK SaltLeaf1 Citrus clementina cDNA clone C07009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300352 ID=CX300352; Name=CX300352; organism=Citrus clementina; type=EST; length=323bp
GGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGG
CTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTCACCGGCAAG
GGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAA
TGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTG
ATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGT
GAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATGCTTCA
ATTTGAAAAAAAAAAAAAAAAAA
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