CX300352

Overview
NameCX300352
Unique NameCX300352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length323
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1029..1351. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 3.394e-27
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  205 EACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.432e-27
Identity = 57/62 (91.94%), Postives = 58/62 (93.55%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  195 EALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 4.432e-27
Identity = 58/62 (93.55%), Postives = 59/62 (95.16%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            EA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   89 EAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.874e-27
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            + FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  202 DTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 9.874e-27
Identity = 55/62 (88.71%), Postives = 59/62 (95.16%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            + FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  202 DTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.426e-25
Identity = 52/62 (83.87%), Postives = 60/62 (96.77%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 187
            ++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  204 DSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.059e-24
Identity = 53/59 (89.83%), Postives = 54/59 (91.53%), Query Frame = 2
Query:    8 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 184
            FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  206 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.991e-24
Identity = 53/61 (86.89%), Postives = 54/61 (88.52%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 184
            + FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  207 DTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.991e-24
Identity = 52/59 (88.14%), Postives = 53/59 (89.83%), Query Frame = 2
Query:    8 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 184
            FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  209 FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 9.564e-22
Identity = 49/60 (81.67%), Postives = 53/60 (88.33%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 181
            + FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  195 DTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of CX300352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB21_PINTH3.394e-2793.55Chlorophyll a-b binding protein type I, chloroplas... [more]
CB22_SOYBN4.432e-2791.94Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB22_PINSY4.432e-2793.55Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB23_ORYSJ9.874e-2788.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI9.874e-2788.71Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA1.426e-2583.87Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC2.059e-2489.83Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA5.991e-2486.89Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU5.991e-2488.14Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO9.564e-2281.67Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC07009B04SK SaltLeaf1 Citrus clementina cDNA clone C07009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300352 ID=CX300352; Name=CX300352; organism=Citrus clementina; type=EST; length=323bp
GGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGG
CTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTCACCGGCAAG
GGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAA
TGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTG
ATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGT
GAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATGCTTCA
ATTTGAAAAAAAAAAAAAAAAAA
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