CX300352

Overview
NameCX300352
Unique NameCX300352
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length323
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 2.131e-21
Identity = 47/60 (78.33%), Postives = 52/60 (86.67%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 181
            + FAELKVKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  213 DTFAELKVKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 6.199e-21
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 181
            + FAELKVKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  192 DTFAELKVKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 1.804e-20
Identity = 47/61 (77.05%), Postives = 51/61 (83.61%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 184
            + FAELKVKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  192 DTFAELKVKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 5.248e-20
Identity = 49/61 (80.33%), Postives = 52/61 (85.25%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 184
            EAFAELKVKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  207 EAFAELKVKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.932e-14
Identity = 37/50 (74.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 151
            E  A LKVKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  216 EQGALLKVKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.523e-14
Identity = 34/50 (68.00%), Postives = 43/50 (86.00%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 151
            ++  ELK+KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  216 KSMKELKLKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.136e-13
Identity = 31/50 (62.00%), Postives = 42/50 (84.00%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 151
            ++  ELK+KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  218 KSLKELKLKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
BLAST of CX300352 vs. ExPASy Swiss-Prot
Match: CB21_EUGGR (Chlorophyll a-b binding protein of LHCII type 1 (Fragment) OS=Euglena gracilis PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.214e-13
Identity = 37/61 (60.66%), Postives = 42/61 (68.85%), Query Frame = 2
Query:    2 EAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADP-VNNNAWAYATNFVP 181
            + F ELKVKEIKNGRLAM  M GF+ QAIVTG+GP+EN   HL DP  +N   A  T F P
Sbjct:   61 DTFPELKVKEIKNGRLAMSGMLGFYAQAIVTGEGPVENWLYHLQDPSAHNGLTALVTQFAP 121          
The following BLAST results are available for this feature:
BLAST of CX300352 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 68
Match NameE-valueIdentityDescription
CB2_DUNSA2.131e-2178.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE6.199e-2178.33Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.804e-2077.05Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO5.248e-2080.33Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH1.932e-1474.00Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC2.523e-1468.00Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA2.136e-1362.00Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_EUGGR6.214e-1360.66Chlorophyll a-b binding protein of LHCII type 1 (F... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07009B04SK SaltLeaf1 Citrus clementina cDNA clone C07009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300352 ID=CX300352; Name=CX300352; organism=Citrus clementina; type=EST; length=323bp
GGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGGAAGGTTGG
CTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTCACCGGCAAG
GGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTCAATAACAA
TGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGCTTCGGTTG
ATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAATCTGTTGT
GAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAAATGCTTCA
ATTTGAAAAAAAAAAAAAAAAAA
back to top