CX300355

Overview
NameCX300355
Unique NameCX300355
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length306
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1050..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB2_DUNSA (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella salina PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.175e-18
Identity = 42/53 (79.25%), Postives = 46/53 (86.79%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 160
            VKEIKNGRLAMF+  GFFVQAIVTGKGP+ENL DHLA+P  NNA+AYAT F P
Sbjct:  220 VKEIKNGRLAMFACLGFFVQAIVTGKGPIENLTDHLANPAENNAFAYATKFTP 272          
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB2_CHLRE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas reinhardtii GN=cabII-1 PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.327e-18
Identity = 42/53 (79.25%), Postives = 47/53 (88.68%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 160
            VKEIKNGRLA FSMFGFFVQAIVTGKGP++NL DHLA+P  NNA+A+AT F P
Sbjct:  199 VKEIKNGRLASFSMFGFFVQAIVTGKGPVQNLDDHLANPTVNNAFAFATKFTP 251          
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB2_DUNTE (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Dunaliella tertiolecta PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.841e-17
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 163
            VKEIKNGRLAMFS  GFFVQAIVTGKGP++NL DHLADP  N A+A AT F PG
Sbjct:  199 VKEIKNGRLAMFSCLGFFVQAIVTGKGPVQNLTDHLADPTVNKAFASATKFTPG 252          
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB2_MALDO (Chlorophyll a-b binding protein AB10, chloroplastic OS=Malus domestica PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.472e-16
Identity = 42/54 (77.78%), Postives = 45/54 (83.33%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 163
            VKE+KNGRLAMFSMFGFFVQAIV+ K  LENLADHL   VNNNA +  TNFVPG
Sbjct:  214 VKELKNGRLAMFSMFGFFVQAIVSRKDRLENLADHLGWTVNNNALSNVTNFVPG 267          
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB26_ARATH (Chlorophyll a-b binding protein CP26, chloroplastic OS=Arabidopsis thaliana GN=LHCB5 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.593e-13
Identity = 33/43 (76.74%), Postives = 38/43 (88.37%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 130
            VKEIKNGRLAMF+M GFF+QA VTG+GP+ENLA HL+DP  NN
Sbjct:  223 VKEIKNGRLAMFAMLGFFIQAYVTGEGPVENLAKHLSDPFGNN 265          
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB13_SOLLC (Chlorophyll a-b binding protein 8, chloroplastic OS=Solanum lycopersicum GN=CAB8 PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.365e-12
Identity = 31/43 (72.09%), Postives = 38/43 (88.37%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 130
            +KEIKNGRLAM ++ G+F+QA+VTG GP +NL DHLADPVNNN
Sbjct:  223 LKEIKNGRLAMLAILGYFIQALVTGVGPYQNLLDHLADPVNNN 265          
BLAST of CX300355 vs. ExPASy Swiss-Prot
Match: CB23_PEA (Chlorophyll a-b binding protein 3, chloroplastic OS=Pisum sativum GN=lhca3 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.156e-11
Identity = 28/43 (65.12%), Postives = 37/43 (86.05%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNN 130
            +KE+KNGRLAM ++ G+F+Q +VTG GP +NL DH+ADPVNNN
Sbjct:  225 LKEVKNGRLAMLAILGYFIQGLVTGVGPYQNLLDHVADPVNNN 267          
The following BLAST results are available for this feature:
BLAST of CX300355 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB2_DUNSA2.175e-1879.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_CHLRE6.327e-1879.25Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_DUNTE1.841e-1777.78Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB2_MALDO3.472e-1677.78Chlorophyll a-b binding protein AB10, chloroplasti... [more]
CB26_ARATH3.593e-1376.74Chlorophyll a-b binding protein CP26, chloroplasti... [more]
CB13_SOLLC1.365e-1272.09Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB23_PEA1.156e-1165.12Chlorophyll a-b binding protein 3, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07009B09SK SaltLeaf1 Citrus clementina cDNA clone C07009B09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300355 ID=CX300355; Name=CX300355; organism=Citrus clementina; type=EST; length=306bp
GGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTT
TCTTTGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCC
GACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAA
CTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCG
GTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATT
TGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAA
AAAAAA
back to top