CX300370

Overview
NameCX300370
Unique NameCX300370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length336
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.913e-31
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  201 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB29_MAIZE (Chlorophyll a-b binding protein M9, chloroplastic OS=Zea mays GN=CAB-M9 PE=2 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.913e-31
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFA++KVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK
Sbjct:  201 DDPEAFADVKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 265          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.913e-31
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  204 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 133.65 bits (335), Expect = 2.913e-31
Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAEL+VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  202 DDPEAFAELEVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.804e-31
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  202 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.804e-31
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  199 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 133.265 bits (334), Expect = 3.804e-31
Identity = 62/64 (96.88%), Postives = 64/64 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 192
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  198 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.968e-31
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  203 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.968e-31
Identity = 62/65 (95.38%), Postives = 65/65 (100.00%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            +DPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  203 EDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 4.968e-31
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  203 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of CX300370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB2A_SOLLC2.913e-3196.92Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB29_MAIZE2.913e-3195.38Chlorophyll a-b binding protein M9, chloroplastic ... [more]
CB28_PEA2.913e-3195.38Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB21_PETSP2.913e-3196.92Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_NICPL3.804e-3195.38Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB23_SOYBN3.804e-3196.92Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE3.804e-3196.88Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2F_SOLLC4.968e-3195.38Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC4.968e-3195.38Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB2A_SPIOL4.968e-3196.92Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07009D05SK SaltLeaf1 Citrus clementina cDNA clone C07009D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300370 ID=CX300370; Name=CX300370; organism=Citrus clementina; type=EST; length=336bp
GATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGG
AAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTCA
CCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTC
AATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGC
TTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAA
TCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAA
ATGCTTCAATTTGATCTTAAAAAAAAAAAAAAAAAA
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