CX300370

Overview
NameCX300370
Unique NameCX300370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length336
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 5.493e-30
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  201 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 129.413 bits (324), Expect = 5.493e-30
Identity = 61/65 (93.85%), Postives = 63/65 (96.92%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDP+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  201 DDPDAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 7.174e-30
Identity = 60/65 (92.31%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAF ELKVKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  201 DDPEAFGELKVKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 9.370e-30
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  201 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB26_PETSP (Chlorophyll a-b binding protein 37, chloroplastic OS=Petunia sp. GN=CAB37 PE=3 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.598e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWA+ATNFVPGK
Sbjct:  201 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHVADPVANNAWAFATNFVPGK 265          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.598e-29
Identity = 60/65 (92.31%), Postives = 63/65 (96.92%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            +DPE  AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  200 EDPERSAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 1.598e-29
Identity = 60/63 (95.24%), Postives = 62/63 (98.41%), Query Frame = 1
Query:    7 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            PEAFAELKVKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  166 PEAFAELKVKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB23_POLMU (Chlorophyll a-b binding protein type 1 member F3, chloroplastic OS=Polystichum munitum GN=CABF3 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.087e-29
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEAFAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DHLADP  NNAWAYATNF PGK
Sbjct:  201 DDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHLADPAVNNAWAYATNFTPGK 265          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 2.087e-29
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  202 DDPEACAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.726e-29
Identity = 60/65 (92.31%), Postives = 61/65 (93.85%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEA AELKVKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  192 DDPEALAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
The following BLAST results are available for this feature:
BLAST of CX300370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB23_TOBAC5.493e-3093.85Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB21_GOSHI5.493e-3093.85Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_MAIZE7.174e-3092.31Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC9.370e-3092.31Chlorophyll a-b binding protein 4, chloroplastic O... [more]
CB26_PETSP1.598e-2992.31Chlorophyll a-b binding protein 37, chloroplastic ... [more]
CB23_APIGR1.598e-2992.31Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA1.598e-2995.24Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB23_POLMU2.087e-2990.77Chlorophyll a-b binding protein type 1 member F3, ... [more]
CB21_PINTH2.087e-2993.85Chlorophyll a-b binding protein type I, chloroplas... [more]
CB22_SOYBN2.726e-2992.31Chlorophyll a-b binding protein 2, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07009D05SK SaltLeaf1 Citrus clementina cDNA clone C07009D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300370 ID=CX300370; Name=CX300370; organism=Citrus clementina; type=EST; length=336bp
GATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGG
AAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTCA
CCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTC
AATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGC
TTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAA
TCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAA
ATGCTTCAATTTGATCTTAAAAAAAAAAAAAAAAAA
back to top