CX300370

Overview
NameCX300370
Unique NameCX300370
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length336
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.726e-29
Identity = 61/65 (93.85%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDPEA AELKVKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   86 DDPEAKAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 2.726e-29
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            +DPEAFAELKVKE KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  203 EDPEAFAELKVKETKNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.073e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  199 DDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB23_ORYSI (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. indica GN=OsI_012078 PE=2 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 6.073e-29
Identity = 58/65 (89.23%), Postives = 62/65 (95.38%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDP+ FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  199 DDPDTFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 3.937e-28
Identity = 58/63 (92.06%), Postives = 61/63 (96.83%), Query Frame = 1
Query:    7 PEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            P+AFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  204 PQAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB215_PEA (Chlorophyll a-b binding protein 215, chloroplastic OS=Pisum sativum GN=CAB215 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 8.770e-28
Identity = 55/65 (84.62%), Postives = 63/65 (96.92%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 195
            DDP++FAELKVKE+KNGRLAMFSMFGFFVQAIVTGKGP++NL DH+ADPV NNAWA+ATNFVPG+
Sbjct:  201 DDPDSFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIQNLYDHVADPVANNAWAFATNFVPGQ 265          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB23_SOLLC (Chlorophyll a-b binding protein 13, chloroplastic OS=Solanum lycopersicum GN=CAB13 PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 1.654e-26
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 192
            DDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL +PV NNAW YAT FVPG
Sbjct:  201 DDPTTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLLDHLDNPVANNAWVYATKFVPG 264          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB2_PHYPA (Chlorophyll a-b binding protein, chloroplastic OS=Physcomitrella patens PE=3 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 3.685e-26
Identity = 56/64 (87.50%), Postives = 57/64 (89.06%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 192
            DDP+ FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHLADPV NNAWAYA    PG
Sbjct:  204 DDPDTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLNDHLADPVANNAWAYAPTSPPG 267          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB23_HORVU (Chlorophyll a-b binding protein of LHCII type III, chloroplastic OS=Hordeum vulgare GN=LHBC PE=2 SV=1)

HSP 1 Score: 115.931 bits (289), Expect = 6.285e-26
Identity = 55/64 (85.94%), Postives = 56/64 (87.50%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 192
            DDP  FAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENL DHL DPV NNAW +AT F PG
Sbjct:  204 DDPVTFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLFDHLDDPVANNAWVFATKFAPG 267          
BLAST of CX300370 vs. ExPASy Swiss-Prot
Match: CB2_CHLMO (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Chlamydomonas moewusii PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.882e-24
Identity = 52/63 (82.54%), Postives = 56/63 (88.89%), Query Frame = 1
Query:    1 DDPEAFAELKVKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVP 189
            DDP+ FAELKVKEIKNGRLAMFS FGFFVQAIVTGKGP++NLADHLADP  NNA+A AT F P
Sbjct:  192 DDPDTFAELKVKEIKNGRLAMFSCFGFFVQAIVTGKGPIQNLADHLADPGTNNAFAAATKFTP 254          
The following BLAST results are available for this feature:
BLAST of CX300370 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 70
Match NameE-valueIdentityDescription
CB22_PINSY2.726e-2993.85Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_PETSP2.726e-2990.77Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB23_ORYSJ6.073e-2989.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_ORYSI6.073e-2989.23Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_WHEAT3.937e-2892.06Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB215_PEA8.770e-2884.62Chlorophyll a-b binding protein 215, chloroplastic... [more]
CB23_SOLLC1.654e-2687.50Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB2_PHYPA3.685e-2687.50Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB23_HORVU6.285e-2685.94Chlorophyll a-b binding protein of LHCII type III,... [more]
CB2_CHLMO5.882e-2482.54Chlorophyll a-b binding protein of LHCII type I, c... [more]

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Properties
Property NameValue
Genbank descriptionC07009D05SK SaltLeaf1 Citrus clementina cDNA clone C07009D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300370 ID=CX300370; Name=CX300370; organism=Citrus clementina; type=EST; length=336bp
GATGACCCGGAGGCTTTTGCTGAGCTCAAGGTTAAGGAAATCAAGAATGG
AAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGCCATTGTCA
CCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTGACCCTGTC
AATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGAAAGTGAGC
TTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATATCATGTAAA
TCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTATTTATAAA
ATGCTTCAATTTGATCTTAAAAAAAAAAAAAAAAAA
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