CX300376

Overview
NameCX300376
Unique NameCX300376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length375
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL1A1_RABIT (Retinal dehydrogenase 1 OS=Oryctolagus cuniculus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 8.962e-20
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            +RAN T +GL+AG+FTK  D A T+  AL+AGTVW+NCY V  A +PFGG+K+SG GRE G Y L  Y +VK V
Sbjct:  414 KRANNTTYGLSAGIFTKDLDKAVTVSSALQAGTVWVNCYSVVSAQVPFGGFKMSGNGRELGEYGLQQYTEVKTV 487          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL2C4_ARATH (Aldehyde dehydrogenase family 2 member C4 OS=Arabidopsis thaliana GN=ALDH2C4 PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.170e-19
Identity = 40/82 (48.78%), Postives = 59/82 (71.95%), Query Frame = 1
Query:    7 ANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPVKNPAWL 252
            AN T++GLAAG+ ++  D  NT+ R+++AG +W+NCY  FD   P+GGYK+SG  RE G+ +L+ YLQ K+VV P+ N  W+
Sbjct:  420 ANNTKYGLAAGILSQDIDLINTVSRSIKAGIIWVNCYFGFDLDCPYGGYKMSGNCRESGMDALDNYLQTKSVVMPLHNSPWM 501          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL1A1_CHICK (Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A1 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.607e-19
Identity = 44/74 (59.46%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            +RAN T +GLAA VFTK  D A T   AL+AGTVW+NCY  F A  PFGG+K+SG GRE G Y L  Y +VK V
Sbjct:  427 KRANNTTYGLAAAVFTKDIDKALTFASALQAGTVWVNCYSAFSAQCPFGGFKMSGNGRELGEYGLQEYTEVKTV 500          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH4_BACSU (Putative aldehyde dehydrogenase dhaS OS=Bacillus subtilis GN=dhaS PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.405e-19
Identity = 42/73 (57.53%), Postives = 58/73 (79.45%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN + +GLAAG++T++   A+ +   L+AGTVW+NCY+VFDAA PFGGYK SG+GRE G Y+L+ Y +VK+V
Sbjct:  417 RANHSEYGLAAGLWTENVKQAHYIADRLQAGTVWVNCYNVFDAASPFGGYKQSGLGREMGSYALDNYTEVKSV 489          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL1A1_HUMAN (Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1 PE=1 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.908e-19
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            +RAN T +GL+AGVFTK  D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  419 KRANNTFYGLSAGVFTKDIDKAITISSALQAGTVWVNCYGVVSAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH2_MACPR (Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=Macroscelides proboscideus PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.207e-18
Identity = 43/78 (55.13%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 234
            +RAN T +GLAAGVFTK  D A T+  AL+AGTVW+NCY       PFGG+K+SG GRE G Y L+ Y +VK V   +
Sbjct:  158 KRANNTFYGLAAGVFTKDLDKAVTVSAALQAGTVWVNCYMANSVQCPFGGFKMSGNGRELGEYGLHEYTEVKTVTMKI 235          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL1A1_MACFA (Retinal dehydrogenase 1 OS=Macaca fascicularis GN=ALDH1A1 PE=2 SV=3)

HSP 1 Score: 89.7373 bits (221), Expect = 4.917e-18
Identity = 42/74 (56.76%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            +RAN T +GL+AGVFT   D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  419 KRANNTFYGLSAGVFTNDIDKAVTISSALQAGTVWVNCYGVVTAQCPFGGFKMSGNGRELGEYGFHEYTEVKTV 492          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL1A1_HORSE (Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1A1 PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.917e-18
Identity = 42/74 (56.76%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            +RAN T +GL AG FTK  D A T+  AL+AGTVW+NCY V  A  PFGG+K+SG GRE G Y  + Y +VK V
Sbjct:  418 KRANNTTYGLFAGSFTKDLDKAITVSAALQAGTVWVNCYGVVSAQCPFGGFKMSGNGREMGEYGFHEYTEVKTV 491          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL1A3_MOUSE (Aldehyde dehydrogenase family 1 member A3 OS=Mus musculus GN=Aldh1a3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 45/83 (54.22%), Postives = 56/83 (67.47%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV--KNP 243
            +RAN T +GL A VFTK+ D A  +  AL +GTVWINCY+ F A  PFGG+K+SG GRE G Y+L  Y +VK V   +  KNP
Sbjct:  430 KRANSTDYGLTAAVFTKNLDKALKLAAALESGTVWINCYNAFYAQAPFGGFKMSGNGRELGEYALAEYTEVKTVTIKLEEKNP 512          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL1A1_RAT (Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Aldh1a1 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 6.422e-18
Identity = 41/78 (52.56%), Postives = 53/78 (67.95%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQPV 234
            +RAN T +GLAAGVFTK  D A T+  AL+AG VW+NCY +  A  PFGG+K+SG GRE G + L  Y ++K V   +
Sbjct:  419 KRANNTTYGLAAGVFTKDLDRAITVSSALQAGVVWVNCYMILSAQCPFGGFKMSGNGRELGEHGLYEYTELKTVAMKI 496          
The following BLAST results are available for this feature:
BLAST of CX300376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
AL1A1_RABIT8.962e-2058.11Retinal dehydrogenase 1 OS=Oryctolagus cuniculus G... [more]
AL2C4_ARATH1.170e-1948.78Aldehyde dehydrogenase family 2 member C4 OS=Arabi... [more]
AL1A1_CHICK2.607e-1959.46Retinal dehydrogenase 1 OS=Gallus gallus GN=ALDH1A... [more]
ALDH4_BACSU3.405e-1957.53Putative aldehyde dehydrogenase dhaS OS=Bacillus s... [more]
AL1A1_HUMAN9.908e-1958.11Retinal dehydrogenase 1 OS=Homo sapiens GN=ALDH1A1... [more]
ALDH2_MACPR2.207e-1855.13Aldehyde dehydrogenase, cytosolic 2 (Fragment) OS=... [more]
AL1A1_MACFA4.917e-1856.76Retinal dehydrogenase 1 OS=Macaca fascicularis GN=... [more]
AL1A1_HORSE4.917e-1856.76Retinal dehydrogenase 1 OS=Equus caballus GN=ALDH1... [more]
AL1A3_MOUSE6.422e-1854.22Aldehyde dehydrogenase family 1 member A3 OS=Mus m... [more]
AL1A1_RAT6.422e-1852.56Retinal dehydrogenase 1 OS=Rattus norvegicus GN=Al... [more]

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Properties
Property NameValue
Genbank descriptionC07009E02SK SaltLeaf1 Citrus clementina cDNA clone C07009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300376 ID=CX300376; Name=CX300376; organism=Citrus clementina; type=EST; length=375bp
AGAAGAGCAAATAAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAA
GAGTGCAGACACTGCTAACACCATGATGCGTGCACTGAGAGCTGGGACTG
TATGGATTAACTGCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGG
TACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGC
TTACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGC
TCTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAG
GACAGCGTGCAAATATCAGCTTGTAATTATGGAGCAAATGGATAATTTAC
TTTAGAACAAACTTAAACTAAACTA
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