CX300376

Overview
NameCX300376
Unique NameCX300376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length375
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL1A2_MOUSE (Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2 PE=1 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.339e-15
Identity = 41/81 (50.62%), Postives = 52/81 (64.20%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVVQ--PVKN 240
            RAN + FGL A VFT   + A  +  A++AGTVWINCY+  +A  PFGG+K+SG GRE G + L  Y +VK V    P KN
Sbjct:  437 RANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGEFGLREYSEVKTVTVKIPQKN 517          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: AL1A2_CHICK (Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A2 PE=2 SV=2)

HSP 1 Score: 81.6481 bits (200), Expect = 1.339e-15
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN + FGL A VFT   + A T+  A++AGTVWINCY+  +A  PFGG+K+SG GRE G   L  Y +VK V
Sbjct:  437 RANNSDFGLVAAVFTNDINKALTVSSAMQAGTVWINCYNALNAQSPFGGFKMSGNGREMGESGLREYSEVKTV 509          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_RHILO (Betaine aldehyde dehydrogenase OS=Rhizobium loti GN=betB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 38/73 (52.05%), Postives = 51/73 (69.86%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN T FGLAAGVFT+    A+ ++  L+AGT WIN Y++    IPFGG+K SGIGRE  + +L  Y Q+K++
Sbjct:  404 RANDTEFGLAAGVFTRDLPRAHRVIAELQAGTCWINAYNLTPVEIPFGGFKQSGIGRENSLAALALYSQLKSI 476          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_PSEFS (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain SBW25) GN=betB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T FGLAAG+ TK  + A+ ++  L AG  WIN +   DA +P GGYK SG+GRE GI SLN + ++K+V
Sbjct:  406 RRANDTDFGLAAGLVTKDLNRAHRVIHQLEAGICWINAWGESDAKMPVGGYKQSGVGRENGISSLNNFTRIKSV 479          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_PSEF5 (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=betB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 39/74 (52.70%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T FGLAAG+ TK  + A+ ++  L AG  WIN +   DA +P GGYK SG+GRE GI SLN + ++K+V
Sbjct:  406 RRANDTDFGLAAGLVTKDLNRAHRVIHQLEAGICWINAWGESDAKMPVGGYKQSGVGRENGISSLNNFTRIKSV 479          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_BRUMB (Betaine aldehyde dehydrogenase OS=Brucella melitensis biotype 2 (strain ATCC 23457) GN=betB PE=3 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.749e-15
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN + FGLAAGVFT      + ++  ++AGT WIN Y++    +PFGGYK SGIGRE GI +L  Y Q+K V
Sbjct:  404 RANDSEFGLAAGVFTADLSRGHHVIGQIKAGTCWINAYNLTSVEVPFGGYKQSGIGRENGIAALAHYSQIKTV 476          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_PSEPF (Betaine aldehyde dehydrogenase OS=Pseudomonas fluorescens (strain Pf0-1) GN=betB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.284e-15
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T FGLAAG+ T+  + A+ ++  L AG  WIN +   DA +P GGYK SG+GRE GI SLN + ++K+V
Sbjct:  406 RRANDTDFGLAAGIVTRDLNRAHRVIHQLEAGICWINAWGESDAKMPVGGYKQSGVGRENGISSLNNFTRIKSV 479          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_BRUSU (Betaine aldehyde dehydrogenase OS=Brucella suis GN=betB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.284e-15
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN + FGLAAGVFT      + ++  ++AGT WIN Y++    +PFGGYK SGIGRE GI +L  Y Q+K V
Sbjct:  404 RANDSEFGLAAGVFTADLSRGHHVIGQIKAGTCWINAYNLTPVEVPFGGYKQSGIGRENGIAALAHYSQIKTV 476          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_BRUSI (Betaine aldehyde dehydrogenase OS=Brucella suis (strain ATCC 23445 / NCTC 10510) GN=betB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.284e-15
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN + FGLAAGVFT      + ++  ++AGT WIN Y++    +PFGGYK SGIGRE GI +L  Y Q+K V
Sbjct:  404 RANDSEFGLAAGVFTADLSRGHHVIGQIKAGTCWINAYNLTPVEVPFGGYKQSGIGRENGIAALAHYSQIKTV 476          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_BRUO2 (Betaine aldehyde dehydrogenase OS=Brucella ovis (strain ATCC 25840 / 63/290 / NCTC 10512) GN=betB PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.284e-15
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN + FGLAAGVFT      + ++  ++AGT WIN Y++    +PFGGYK SGIGRE GI +L  Y Q+K V
Sbjct:  404 RANDSEFGLAAGVFTADLSRGHHVIGQIKAGTCWINAYNLTPVEVPFGGYKQSGIGRENGIAALAHYSQIKTV 476          
The following BLAST results are available for this feature:
BLAST of CX300376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
AL1A2_MOUSE1.339e-1550.62Retinal dehydrogenase 2 OS=Mus musculus GN=Aldh1a2... [more]
AL1A2_CHICK1.339e-1553.42Retinal dehydrogenase 2 OS=Gallus gallus GN=ALDH1A... [more]
BETB_RHILO1.749e-1552.05Betaine aldehyde dehydrogenase OS=Rhizobium loti G... [more]
BETB_PSEFS1.749e-1552.70Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_PSEF51.749e-1552.70Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_BRUMB1.749e-1552.05Betaine aldehyde dehydrogenase OS=Brucella meliten... [more]
BETB_PSEPF2.284e-1551.35Betaine aldehyde dehydrogenase OS=Pseudomonas fluo... [more]
BETB_BRUSU2.284e-1552.05Betaine aldehyde dehydrogenase OS=Brucella suis GN... [more]
BETB_BRUSI2.284e-1552.05Betaine aldehyde dehydrogenase OS=Brucella suis (s... [more]
BETB_BRUO22.284e-1552.05Betaine aldehyde dehydrogenase OS=Brucella ovis (s... [more]

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Properties
Property NameValue
Genbank descriptionC07009E02SK SaltLeaf1 Citrus clementina cDNA clone C07009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300376 ID=CX300376; Name=CX300376; organism=Citrus clementina; type=EST; length=375bp
AGAAGAGCAAATAAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAA
GAGTGCAGACACTGCTAACACCATGATGCGTGCACTGAGAGCTGGGACTG
TATGGATTAACTGCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGG
TACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGC
TTACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGC
TCTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAG
GACAGCGTGCAAATATCAGCTTGTAATTATGGAGCAAATGGATAATTTAC
TTTAGAACAAACTTAAACTAAACTA
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