CX300376

Overview
NameCX300376
Unique NameCX300376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length375
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_RHOS4 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=betB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.646e-15
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN T FGLAAGVFT     A+ ++  L+AGT WIN Y++     PFGG KLSG+GRE G  ++  Y QVK+V
Sbjct:  400 RANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKLSGVGRENGRAAVQHYTQVKSV 472          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_RHOS1 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17029 / ATH 2.4.9) GN=betB PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 6.646e-15
Identity = 39/73 (53.42%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN T FGLAAGVFT     A+ ++  L+AGT WIN Y++     PFGG KLSG+GRE G  ++  Y QVK+V
Sbjct:  400 RANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKLSGVGRENGRAAVEHYTQVKSV 472          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH2_YEAST (Aldehyde dehydrogenase [NAD(P)+] 1 OS=Saccharomyces cerevisiae GN=ALD2 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 8.680e-15
Identity = 38/72 (52.78%), Postives = 49/72 (68.06%), Query Frame = 1
Query:    7 ANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            AN T +GLA+ VFTK    A+   R ++AGTVWIN  +  D  +PFGG+K+SGIGRE G   ++ YLQ KAV
Sbjct:  427 ANDTCYGLASAVFTKDVKKAHMFARDIKAGTVWINSSNDEDVTVPFGGFKMSGIGRELGQSGVDTYLQTKAV 498          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: A9A1A_DANRE (Aldehyde dehydrogenase family 9 member A1-A OS=Danio rerio GN=aldh9a1a PE=2 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 8.680e-15
Identity = 38/75 (50.67%), Postives = 51/75 (68.00%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV 225
            +RAN T FGLA+GVFT+    A+ +   L+AGT +IN Y+V    +PFGGYK+SG GRE G  ++  Y Q+K VV
Sbjct:  424 QRANNTTFGLASGVFTRDIARAHRVAANLQAGTCYINNYNVGPVEVPFGGYKMSGFGRENGTVTIEYYSQLKTVV 498          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: FTHFD_XENLA (10-formyltetrahydrofolate dehydrogenase OS=Xenopus laevis GN=aldh1l1 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            +RAN + FGLA+GVFTK  + A  +   L+AGTV++N Y+  D A PFGG+K SG G++ G  +LN YL+ KAV
Sbjct:  825 KRANDSEFGLASGVFTKDINKALYVSEKLQAGTVFVNTYNKTDVAAPFGGFKQSGFGKDLGEEALNEYLKTKAV 898          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_RHOS5 (Betaine aldehyde dehydrogenase OS=Rhodobacter sphaeroides (strain ATCC 17025 / ATH 2.4.3) GN=betB PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN T FGLAAGVFT     A+ ++  L+AGT WIN Y++     PFGG K+SG+GRE G  ++  Y QVK+V
Sbjct:  400 RANATDFGLAAGVFTADLTRAHRVVAQLQAGTCWINAYNLTPVEAPFGGVKMSGVGRENGRAAVEHYTQVKSV 472          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: ALDH4_YEAST (Potassium-activated aldehyde dehydrogenase, mitochondrial OS=Saccharomyces cerevisiae GN=ALD4 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.134e-14
Identity = 37/72 (51.39%), Postives = 50/72 (69.44%), Query Frame = 1
Query:    7 ANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            AN + +GLAAG+ T + +TA  +   + AGTVWIN Y+ F  A+PFGG+  SG+GRE  + +L  YLQVKAV
Sbjct:  442 ANDSEYGLAAGIHTSNINTALKVADRVNAGTVWINTYNDFHHAVPFGGFNASGLGREMSVDALQNYLQVKAV 513          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_VIBHB (Betaine aldehyde dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=betB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.481e-14
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV 225
            RAN T +GLAAGVFT++   A+ ++  ++AG  WIN +    A +P GGYKLSGIGRE G+ +L  Y Q K+V+
Sbjct:  402 RANNTDYGLAAGVFTQNLSRAHRVIHQIQAGICWINTWGDSPAEMPVGGYKLSGIGRENGVETLTHYTQTKSVL 475          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_KLEP3 (Betaine aldehyde dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=betB PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 1.481e-14
Identity = 37/74 (50.00%), Postives = 50/74 (67.57%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T +GLAAGV T + + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  406 RRANATEYGLAAGVVTPNLNRAHRLIHQLEAGICWINSWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB2_RHIME (Betaine aldehyde dehydrogenase 2 OS=Rhizobium meliloti GN=betB2 PE=3 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 1.481e-14
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN T FGLAAG+FT+    A+ +   L AGTVWIN Y++  A + FGG K SGIGRE G  +++ Y Q+K+V
Sbjct:  403 RANATDFGLAAGIFTRDLVRAHRLAAELEAGTVWINAYNLTPAGMAFGGIKRSGIGRENGRVAIDHYTQLKSV 475          
The following BLAST results are available for this feature:
BLAST of CX300376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
BETB_RHOS46.646e-1553.42Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
BETB_RHOS16.646e-1553.42Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
ALDH2_YEAST8.680e-1552.78Aldehyde dehydrogenase [NAD(P)+] 1 OS=Saccharomyce... [more]
A9A1A_DANRE8.680e-1550.67Aldehyde dehydrogenase family 9 member A1-A OS=Dan... [more]
FTHFD_XENLA1.134e-1451.3510-formyltetrahydrofolate dehydrogenase OS=Xenopus... [more]
BETB_RHOS51.134e-1452.05Betaine aldehyde dehydrogenase OS=Rhodobacter spha... [more]
ALDH4_YEAST1.134e-1451.39Potassium-activated aldehyde dehydrogenase, mitoch... [more]
BETB_VIBHB1.481e-1450.00Betaine aldehyde dehydrogenase OS=Vibrio harveyi (... [more]
BETB_KLEP31.481e-1450.00Betaine aldehyde dehydrogenase OS=Klebsiella pneum... [more]
BETB2_RHIME1.481e-1452.05Betaine aldehyde dehydrogenase 2 OS=Rhizobium meli... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07009E02SK SaltLeaf1 Citrus clementina cDNA clone C07009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300376 ID=CX300376; Name=CX300376; organism=Citrus clementina; type=EST; length=375bp
AGAAGAGCAAATAAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAA
GAGTGCAGACACTGCTAACACCATGATGCGTGCACTGAGAGCTGGGACTG
TATGGATTAACTGCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGG
TACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGC
TTACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGC
TCTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAG
GACAGCGTGCAAATATCAGCTTGTAATTATGGAGCAAATGGATAATTTAC
TTTAGAACAAACTTAAACTAAACTA
back to top