CX300376

Overview
NameCX300376
Unique NameCX300376
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length375
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_VIBVU (Betaine aldehyde dehydrogenase OS=Vibrio vulnificus GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.626e-14
Identity = 38/73 (52.05%), Postives = 50/73 (68.49%), Query Frame = 1
Query:    4 RANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RAN T++GLAAGVFT++   A+ ++  L+AG  WIN +    A +P GGYKLSGIGRE G  +L  Y Q K+V
Sbjct:  402 RANNTQYGLAAGVFTQNLSKAHRVIHQLQAGICWINTWGNSPAEMPVGGYKLSGIGRENGQETLLHYTQTKSV 474          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_VIBSL (Betaine aldehyde dehydrogenase OS=Vibrio splendidus (strain LGP32) GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.626e-14
Identity = 35/75 (46.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAVV 225
            RRAN T++GLAAGVFT++   A+ ++  ++AG  W+N +    A +P GGYKLSG+GRE G  +L  Y Q K+++
Sbjct:  401 RRANDTQYGLAAGVFTQNLSRAHRVIHQMQAGICWVNTWGDSPAEMPVGGYKLSGVGRENGPETLLHYTQTKSIL 475          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_ECOSM (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.626e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  406 RRANDTDYGLAAGIVTADLNLAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_ECOSE (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain SE11) GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.626e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  406 RRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_ECOLU (Betaine aldehyde dehydrogenase OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.626e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  406 RRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_ECOLI (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain K12) GN=betB PE=1 SV=3)

HSP 1 Score: 76.2554 bits (186), Expect = 5.626e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  406 RRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_ECOL5 (Betaine aldehyde dehydrogenase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.626e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  406 RRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_ECOHS (Betaine aldehyde dehydrogenase OS=Escherichia coli O9:H4 (strain HS) GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.626e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  406 RRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_ECODH (Betaine aldehyde dehydrogenase OS=Escherichia coli (strain K12 / DH10B) GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.626e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  406 RRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
BLAST of CX300376 vs. ExPASy Swiss-Prot
Match: BETB_ECO8A (Betaine aldehyde dehydrogenase OS=Escherichia coli O8 (strain IAI1) GN=betB PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 5.626e-14
Identity = 36/74 (48.65%), Postives = 49/74 (66.22%), Query Frame = 1
Query:    1 RRANKTRFGLAAGVFTKSADTANTMMRALRAGTVWINCYDVFDAAIPFGGYKLSGIGREKGIYSLNAYLQVKAV 222
            RRAN T +GLAAG+ T   + A+ ++  L AG  WIN +    A +P GGYK SGIGRE G+ +L +Y QVK++
Sbjct:  406 RRANDTDYGLAAGIVTADLNRAHRVIHQLEAGICWINTWGESPAEMPVGGYKHSGIGRENGVMTLQSYTQVKSI 479          
The following BLAST results are available for this feature:
BLAST of CX300376 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 216
Match NameE-valueIdentityDescription
BETB_VIBVU5.626e-1452.05Betaine aldehyde dehydrogenase OS=Vibrio vulnificu... [more]
BETB_VIBSL5.626e-1446.67Betaine aldehyde dehydrogenase OS=Vibrio splendidu... [more]
BETB_ECOSM5.626e-1448.65Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOSE5.626e-1448.65Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOLU5.626e-1448.65Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOLI5.626e-1448.65Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOL55.626e-1448.65Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECOHS5.626e-1448.65Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECODH5.626e-1448.65Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]
BETB_ECO8A5.626e-1448.65Betaine aldehyde dehydrogenase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionC07009E02SK SaltLeaf1 Citrus clementina cDNA clone C07009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300376 ID=CX300376; Name=CX300376; organism=Citrus clementina; type=EST; length=375bp
AGAAGAGCAAATAAAACACGCTTTGGTCTAGCTGCTGGGGTTTTCACCAA
GAGTGCAGACACTGCTAACACCATGATGCGTGCACTGAGAGCTGGGACTG
TATGGATTAACTGCTACGACGTGTTTGATGCTGCTATTCCTTTCGGTGGG
TACAAGCTGAGTGGCATAGGCCGGGAAAAGGGAATTTACAGCCTTAACGC
TTACTTGCAAGTAAAGGCCGTCGTTCAACCTGTGAAGAACCCAGCATGGC
TCTAGTTTCCTGAAGTTCCCCCTCCCTTTTAATCTGTGTTTATGAATAAG
GACAGCGTGCAAATATCAGCTTGTAATTATGGAGCAAATGGATAATTTAC
TTTAGAACAAACTTAAACTAAACTA
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