CX300377

Overview
NameCX300377
Unique NameCX300377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_USTMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ustilago maydis GN=GAPD PE=3 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 53/170 (31.18%), Postives = 77/170 (45.29%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 508
            V+  KFGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPT N           K    +E+ A  + +++NELKGIL   ++ +VS DF                + ++ VK+++WYDNEWGYS R +DL   +A
Sbjct:  163 VIHDKFGIVEGLMTTVHATTATQKTVDGPSAKDWRGGRAAAANIIPSSTGAAKAVGKVIPSLNGKLTGMAFRVPTTNVSVVDLTARLEKGASYDEIKAEVKRASENELKGILGYTEDAVVSQDFIGNSHSSIFDAAAGISLNNNFVKLVSWYDNEWGYSNRCLDLLVFMA 332          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_ECHMU (Glyceraldehyde-3-phosphate dehydrogenase OS=Echinococcus multilocularis PE=2 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 57/166 (34.34%), Postives = 76/166 (45.78%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNE-LKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            V++  FGI++G MTT HSYT  Q                   NIVP ST                  G+A RVPTPN          SK    +++ AA + ++++  LK IL   ++ +VS DF                + D  VK+IAWYDNE+GYS RVVDL
Sbjct:  162 VINDNFGIVEGLMTTVHSYTATQKVVDGPSKKAWRDGRTAAQNIVPASTGAAKRVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCKLSKPATYDQIKAAVKRASESSALKRILEYTEDQVVSTDFLSTTCSSTFDARAGIALNDTFVKLIAWYDNEFGYSCRVVDL 327          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_CRIGR (Glyceraldehyde-3-phosphate dehydrogenase OS=Cricetulus griseus GN=GAPDH PE=2 SV=2)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 53/171 (30.99%), Postives = 76/171 (44.44%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 511
            V+   FGI++G MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    E++    +++++  LKGIL   ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  161 VIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYEDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSDSHSSTFDAGAGIALNDNFVKLISWYDNEFGYSNRVVDLMAYMAS 331          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3PC_LEIME (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Leishmania mexicana GN=GAPC PE=3 SV=3)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 52/165 (31.52%), Postives = 77/165 (46.67%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            V+++K+GI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K    +++ AA + +A+ E+KGIL   D+ +VS DF                + D  VK+++WYDNE GYS +V+DL
Sbjct:  160 VVNEKYGIVEGLMTTVHATTATQKTVDGPSLKDWRGGRGASQNIIPSSTGAPKAVGKVYPALDGKLTGMAFRVPTPNVSVVDLTVRLEKPATYKDICAAIKAAAEGEMKGILGYTDDEVVSSDFNGVALTSVFDVKAGISLNDHFVKLVSWYDNETGYSHKVLDL 324          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_KLULA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluyveromyces lactis GN=GAP2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 54/172 (31.40%), Postives = 80/172 (46.51%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 514
            V++  FGI +G M+T HS T  Q                   NI+P+ST                  G+A RVPT +          +K+   +E+ A  +++++NELKGIL   ++ +VS DF                +    VK++ WYDNE+GYS RVVDL ++VA N
Sbjct:  160 VVNNAFGIEEGLMSTIHSITATQKTVDGPSQKDWRGGRTASGNIIPSSTGAAKAVGKVLPELQGKLTGMAFRVPTVDVSVVDLTVKLAKEATYDEIKAVIKKASENELKGILGYTEDAVVSSDFLGDTNSSIFDAAAGIQLSPKFVKLVTWYDNEYGYSTRVVDLVELVAKN 331          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_AGABI (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agaricus bisporus GN=gpd2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 4.515e-18
Identity = 53/170 (31.18%), Postives = 76/170 (44.71%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXN-IVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 508
            V+   FGI++G MTT H+ T  Q                  N I+P+ST                  G+++RVPT +           K    E++    R++A+ E KGI++  DE +VS DF                +  + VK+IAWYDNEWGYS+RV +L   VA
Sbjct:  161 VIHDNFGIVEGLMTTVHATTATQKTVDGPSHKDWRGGRGVGNNIIPSSTGAAKAVGKVIPSLNGKLTGLSMRVPTQDVSVVDLVVRLEKPASYEQIKEVMRKAAEGEYKGIIAYTDEDVVSTDFISDNNSCVFDAKAGIQLSPNFVKLIAWYDNEWGYSRRVCNLLQYVA 330          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_DROPS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Drosophila pseudoobscura pseudoobscura GN=Gapdh2 PE=2 SV=2)

HSP 1 Score: 90.5077 bits (223), Expect = 5.896e-18
Identity = 54/165 (32.73%), Postives = 73/165 (44.24%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            V++  F I++G MTT H+ T  Q                   NI+P +T                  G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE+GYS RV+DL
Sbjct:  160 VINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNEFGYSNRVIDL 324          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_PICCI (Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia ciferrii GN=GPD PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 55/171 (32.16%), Postives = 79/171 (46.20%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 511
            +++ KFGI +G MTT HS T  Q                   NI+P+ST                  G++LRVPT +           K    +E+ AA +E+A+  LKG++   ++ +VS DF                +    VK+IAWYDNE+GYS RVVDL + VA+
Sbjct:  162 IINNKFGIEEGLMTTVHSITATQKTVDGPSHKDWRSGPTASGNIIPSSTGAAKAVGKVIPELAGKLTGMSLRVPTVDVSVVDLTVKLLKDATYDEIKAAVKEAAEGPLKGVVGYTEDQVVSSDFLTDNRSSIFDAEAGIWLSPRFVKLIAWYDNEYGYSTRVVDLLEYVAS 332          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_PHANO (Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeosphaeria nodorum GN=GPD1 PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 53/170 (31.18%), Postives = 75/170 (44.12%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 508
            V+  KF II+G MTT HSYT  Q                   NI+P+ST                  G+++RVPT N           K    +E+  A + +AD  L GIL   ++ +VS D                 +  + VK+++WYDNEWGYS+RV+DL   +A
Sbjct:  162 VIHDKFTIIEGLMTTVHSYTATQKVVDGPSAKDWRGGRTAAQNIIPSSTGAAKAVGKVIPDLNGKLTGMSMRVPTSNVSVVDLTVRLEKGATYDEIKEAVKAAADGPLNGILGYTEDEIVSTDLNGDTRSSIFDAKAGISLNKNFVKLVSWYDNEWGYSRRVLDLLVYIA 331          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_MOUSE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mus musculus GN=Gapdh PE=1 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 7.701e-18
Identity = 52/171 (30.41%), Postives = 76/171 (44.44%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 511
            V+   FGI++G MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    +++    +++++  LKGIL   ++ +VS DF                + D+ VK+I+WYDNE+GYS RVVDL   +A+
Sbjct:  161 VIHDNFGIVEGLMTTVHAITATQKTVDGPSGKLWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTCRLEKPAKYDDIKKVVKQASEGPLKGILGYTEDQVVSCDFNSNSHSSTFDAGAGIALNDNFVKLISWYDNEYGYSNRVVDLMAYMAS 331          
The following BLAST results are available for this feature:
BLAST of CX300377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
G3P_USTMA4.515e-1831.18Glyceraldehyde-3-phosphate dehydrogenase OS=Ustila... [more]
G3P_ECHMU4.515e-1834.34Glyceraldehyde-3-phosphate dehydrogenase OS=Echino... [more]
G3P_CRIGR4.515e-1830.99Glyceraldehyde-3-phosphate dehydrogenase OS=Cricet... [more]
G3PC_LEIME4.515e-1831.52Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P2_KLULA4.515e-1831.40Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Kluy... [more]
G3P2_AGABI4.515e-1831.18Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Agar... [more]
G3P2_DROPS5.896e-1832.73Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Dros... [more]
G3P_PICCI7.701e-1832.16Glyceraldehyde-3-phosphate dehydrogenase OS=Pichia... [more]
G3P_PHANO7.701e-1831.18Glyceraldehyde-3-phosphate dehydrogenase OS=Phaeos... [more]
G3P_MOUSE7.701e-1830.41Glyceraldehyde-3-phosphate dehydrogenase OS=Mus mu... [more]

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Properties
Property NameValue
Genbank descriptionC07009E03SK SaltLeaf1 Citrus clementina cDNA clone C07009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300377 ID=CX300377; Name=CX300377; organism=Citrus clementina; type=EST; length=558bp
GGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACAC
ACTCGTACACTGGCGACCAAAGGCTACTCGATGCTAGCCACCGTGACCTC
AGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGC
GGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACG
GCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTC
GTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAG
AGAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGC
CCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATG
GTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACA
TTGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCT
GTAATCGG
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