CX300377

Overview
NameCX300377
Unique NameCX300377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_BACME (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacillus megaterium GN=gap PE=3 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 4.074e-27
Identity = 69/169 (40.83%), Postives = 85/169 (50.30%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 508
            VL+ KFG+ +G MTT HSYT DQ                  NI+PTST                 NG A+RVPTPN           K+   E+VN A +E+A+ +LKGIL   +EPLVS D+                M  +MVKVI+WYDNE GYS RVVDLA  +A
Sbjct:  163 VLNDKFGLKRGMMTTVHSYTNDQQILDLPHKDYRRARAAAENIIPTSTGAAKAVSLVLPELKGKLNGGAMRVPTPNVSLVDLVAELDKEVTVEDVNNALKEAAEGDLKGILGYSEEPLVSGDYNGNINSSTIDALSTMVMEGNMVKVISWYDNESGYSNRVVDLAQYIA 331          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_BACSU (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Bacillus subtilis GN=gapB PE=1 SV=1)

HSP 1 Score: 116.701 bits (291), Expect = 7.683e-26
Identity = 67/173 (38.73%), Postives = 81/173 (46.82%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 520
            VLD++FGI  G MTT H+YT DQ                  +I+PT+T                 +G+ALRVP PN               AEEVN AF+ +A   + G+L   DEPLVS D+                M D  VKV+AWYDNEWGYS RVVDL   VA   K
Sbjct:  163 VLDEEFGIESGLMTTVHAYTNDQKNIDNPHKDLRRARACGESIIPTTTGAAKALSLVLPHLKGKLHGLALRVPVPNVSLVDLVVDLKTDVTAEEVNEAFKRAAKTSMYGVLDYSDEPLVSTDYNTNPHSAVIDGLTTMVMEDRKVKVLAWYDNEWGYSCRVVDLIRHVAARMK 335          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_MYCTU (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium tuberculosis GN=gap PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.919e-25
Identity = 65/171 (38.01%), Postives = 82/171 (47.95%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 514
            VLD +FGI+KG MTT H+YT DQ                  NIVPTST                 +G ALRVP P           S +   +E+NAAF+ +A+  LKGIL   D P+VS D                 + DD  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  169 VLDDEFGIVKGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLVGKS 338          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_MYCBO (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium bovis GN=gap PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 2.919e-25
Identity = 65/171 (38.01%), Postives = 82/171 (47.95%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 514
            VLD +FGI+KG MTT H+YT DQ                  NIVPTST                 +G ALRVP P           S +   +E+NAAF+ +A+  LKGIL   D P+VS D                 + DD  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  169 VLDDEFGIVKGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAIGLVMPQLKGKLDGYALRVPIPTGSVTDLTVDLSTRASVDEINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DDQAKVVSWYDNEWGYSNRLVDLVTLVGKS 338          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_THEMA (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermotoga maritima GN=gap PE=1 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 8.494e-25
Identity = 61/168 (36.31%), Postives = 83/168 (49.40%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 505
            VL +KFGI+ G +TT HSYT DQ                  NI+PT+T                 +G+A+RVPTP+           K+T  EEVNA  +E+ +  LKGI+   DEP+VS D                 +G  +VKV +WYDNE+GYS RVVD  +++
Sbjct:  163 VLHEKFGIVSGMLTTVHSYTNDQRVLDLPHKDLRRARAAAVNIIPTTTGAAKAVALVVPEVKGKLDGMAIRVPTPDGSITDLTVLVEKETTVEEVNAVMKEATEGRLKGIIGYNDEPIVSSDIIGTTFSGIFDATITNVIGGKLVKVASWYDNEYGYSNRVVDTLELL 330          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_MYCAV (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium avium GN=gapA PE=3 SV=3)

HSP 1 Score: 110.923 bits (276), Expect = 4.216e-24
Identity = 63/171 (36.84%), Postives = 81/171 (47.37%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 514
            VLD +FGI++G MTT H+YT DQ                  NIVPTST                 +G ALRVP P            K    E++NAAF+ +A+  LKGIL   D P+VS D                 + D+  KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  169 VLDDEFGIVRGLMTTIHAYTQDQNLQDGPHKDLRRARAAALNIVPTSTGAAKAIGLVMPNLKGKLDGYALRVPIPTGSVTDLTAELKKPASVEDINAAFKAAAEGRLKGILKYYDAPIVSSDIVTDPHSSIFDSGLTKVI-DNQAKVVSWYDNEWGYSNRLVDLVALVGKS 338          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_STAAW (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 65/166 (39.16%), Postives = 81/166 (48.80%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 499
            VL+ +FGI+ G MTT H+ T DQ                  +I+PTST                 +G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  164 VLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_STAAS (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 65/166 (39.16%), Postives = 81/166 (48.80%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 499
            VL+ +FGI+ G MTT H+ T DQ                  +I+PTST                 +G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  164 VLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_STAAR (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 65/166 (39.16%), Postives = 81/166 (48.80%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 499
            VL+ +FGI+ G MTT H+ T DQ                  +I+PTST                 +G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  164 VLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPHSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_STAAN (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 65/166 (39.16%), Postives = 81/166 (48.80%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 499
            VL+ +FGI+ G MTT H+ T DQ                  +I+PTST                 +G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  164 VLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
The following BLAST results are available for this feature:
BLAST of CX300377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
G3P_BACME4.074e-2740.83Glyceraldehyde-3-phosphate dehydrogenase OS=Bacill... [more]
G3P2_BACSU7.683e-2638.73Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Baci... [more]
G3P_MYCTU2.919e-2538.01Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_MYCBO2.919e-2538.01Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_THEMA8.494e-2536.31Glyceraldehyde-3-phosphate dehydrogenase OS=Thermo... [more]
G3P_MYCAV4.216e-2436.84Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P2_STAAW5.506e-2439.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAS5.506e-2439.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAR5.506e-2439.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAN5.506e-2439.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]

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Properties
Property NameValue
Genbank descriptionC07009E03SK SaltLeaf1 Citrus clementina cDNA clone C07009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300377 ID=CX300377; Name=CX300377; organism=Citrus clementina; type=EST; length=558bp
GGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACAC
ACTCGTACACTGGCGACCAAAGGCTACTCGATGCTAGCCACCGTGACCTC
AGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGC
GGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACG
GCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTC
GTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAG
AGAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGC
CCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATG
GTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACA
TTGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCT
GTAATCGG
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