CX300377

Overview
NameCX300377
Unique NameCX300377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_SALPK (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A (strain AKU_12601) GN=epd PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 45/163 (27.61%), Postives = 64/163 (39.26%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            +LD  +GI  GT+T  HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  166 LLDDAYGIESGTVTAIHSAMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_SALPA (D-erythrose-4-phosphate dehydrogenase OS=Salmonella paratyphi A GN=epd PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 45/163 (27.61%), Postives = 64/163 (39.26%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            +LD  +GI  GT+T  HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  166 LLDDAYGIESGTVTAIHSAMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKASEVNQLLQKAAQGAFHGIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_PSEHT (D-erythrose-4-phosphate dehydrogenase OS=Pseudoalteromonas haloplanktis (strain TAC 125) GN=epd PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.165e-14
Identity = 48/165 (29.09%), Postives = 66/165 (40.00%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            VLD  FGI  G +TT H+   DQ                  +I+P  T                   IA+RVPT N          +       VN A +  A + L+GILS   EPLVS+DF                    ++K++ W DNEWG++ R++D A
Sbjct:  166 VLDDAFGIESGAITTIHASMNDQPVIDAYHHDLRRTRAASQSIIPVDTKLARGIDRILPKFKGRFEAIAVRVPTINVTAMDLSVTVNTDVDLNAVNNALKAQAKDRLEGILSYTAEPLVSIDFNHDPHSCIIDGTQTRVSHKRLIKLLVWCDNEWGFANRMLDTA 330          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_CITK8 (D-erythrose-4-phosphate dehydrogenase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=epd PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 6.746e-14
Identity = 46/163 (28.22%), Postives = 65/163 (39.88%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            +LD  +GI  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS+DF                 G  ++K + W DNEWG++ R++D
Sbjct:  166 LLDDAYGIESGTVTTIHSAMHDQQVIDAYHSDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKANEVNQLLQKAAHGAFHGIVDYTELPLVSIDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_SHEDO (D-erythrose-4-phosphate dehydrogenase OS=Shewanella denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013) GN=epd PE=3 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 8.811e-14
Identity = 45/163 (27.61%), Postives = 64/163 (39.26%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            VLD  FG+I G +TT HS   DQ                  +I+P  T                   I++RVPT N            +     +N+  +++A     GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  165 VLDSHFGVISGAITTIHSAMNDQQVIDAYHDDLRRTRAAGQSIIPVDTKLARGIERILPKMKDKFEAISVRVPTINVTAIDVSVTLRDRVDISIINSVLQQAAKGRFDGILGYTDEPLVSCDFNHDPRSSIVDATQTRVSDGHLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_SHESW (D-erythrose-4-phosphate dehydrogenase OS=Shewanella sp. (strain W3-18-1) GN=epd PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 46/163 (28.22%), Postives = 63/163 (38.65%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            VLD+ FG+  G +TT HS   DQ                  +I+P  T                   I++RVPT N          +K      VN     +A+    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  165 VLDKHFGVKSGAITTIHSAMNDQQVIDAYHDDLRRTRAAGQSIIPVDTKLARGIERILPHMKDKFEAISVRVPTINVTAIDLSVTLAKTVDIASVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_SHEPC (D-erythrose-4-phosphate dehydrogenase OS=Shewanella putrefaciens (strain CN-32 / ATCC BAA-453) GN=epd PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 46/163 (28.22%), Postives = 63/163 (38.65%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            VLD+ FG+  G +TT HS   DQ                  +I+P  T                   I++RVPT N          +K      VN     +A+    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  165 VLDKHFGVKSGAITTIHSAMNDQQVIDAYHDDLRRTRAAGQSIIPVDTKLARGIERILPHMKDKFEAISVRVPTINVTAIDLSVTLAKTVDIASVNQVLELAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_SHEB2 (D-erythrose-4-phosphate dehydrogenase OS=Shewanella baltica (strain OS223) GN=epd PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 46/163 (28.22%), Postives = 62/163 (38.04%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            VLD+ FG+  G +TT HS   DQ                  +I+P  T                   I++RVPT N           K      VN     +A+    GIL   DEPLVS DF                    +VK++ W DNEWG++ R++D
Sbjct:  165 VLDRHFGVKSGAITTIHSAMNDQQVIDAYHDDLRRTRAAGQSIIPVDTKLARGIERILPHMKDKFEAISVRVPTINVTAIDLSVTLEKTVDIATVNHVLESAANGRFNGILGYTDEPLVSCDFNHDPRSSIVDGTQTRVSAGQLVKLLLWCDNEWGFANRMLD 327          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_AERS4 (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas salmonicida (strain A449) GN=epd PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 48/162 (29.63%), Postives = 67/162 (41.36%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            L ++F I  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           KK    +VN A + ++   L GIL   +EPLVSVDF                   ++VK++ W DNEWG++ R++D
Sbjct:  166 LHREFEINCGTITTIHSAMHDQQVIDAYHSDLRRTRAASQSIIPVDTKLAKGLERILPHFAGKFEAIAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_AERHH (D-erythrose-4-phosphate dehydrogenase OS=Aeromonas hydrophila subsp. hydrophila (strain ATCC 7966 / NCIB 9240) GN=epd PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.151e-13
Identity = 48/162 (29.63%), Postives = 67/162 (41.36%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            L ++F I  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           KK    +VN A + ++   L GIL   +EPLVSVDF                   ++VK++ W DNEWG++ R++D
Sbjct:  166 LHREFEINCGTITTIHSAMHDQQVIDAYHSDLRRTRAASQSIIPVDTKLAKGLERILPHFAGKFEAIAVRVPTINVTAMDLSITVRKKVTVTDVNQALQRASRGTLSGILDYTEEPLVSVDFNHDAHSCIIDGTQTRVSDANLVKMLMWCDNEWGFANRMLD 327          
The following BLAST results are available for this feature:
BLAST of CX300377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
E4PD_SALPK5.165e-1427.61D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_SALPA5.165e-1427.61D-erythrose-4-phosphate dehydrogenase OS=Salmonell... [more]
E4PD_PSEHT5.165e-1429.09D-erythrose-4-phosphate dehydrogenase OS=Pseudoalt... [more]
E4PD_CITK86.746e-1428.22D-erythrose-4-phosphate dehydrogenase OS=Citrobact... [more]
E4PD_SHEDO8.811e-1427.61D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHESW1.151e-1328.22D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEPC1.151e-1328.22D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_SHEB21.151e-1328.22D-erythrose-4-phosphate dehydrogenase OS=Shewanell... [more]
E4PD_AERS41.151e-1329.63D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]
E4PD_AERHH1.151e-1329.63D-erythrose-4-phosphate dehydrogenase OS=Aeromonas... [more]

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Properties
Property NameValue
Genbank descriptionC07009E03SK SaltLeaf1 Citrus clementina cDNA clone C07009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300377 ID=CX300377; Name=CX300377; organism=Citrus clementina; type=EST; length=558bp
GGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACAC
ACTCGTACACTGGCGACCAAAGGCTACTCGATGCTAGCCACCGTGACCTC
AGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGC
GGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACG
GCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTC
GTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAG
AGAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGC
CCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATG
GTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACA
TTGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCT
GTAATCGG
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