CX300377

Overview
NameCX300377
Unique NameCX300377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_COLP3 (D-erythrose-4-phosphate dehydrogenase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=epd PE=3 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.963e-13
Identity = 46/166 (27.71%), Postives = 70/166 (42.17%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            V+D+ FG+  G++TT HS   DQ                  +I+P  T                   IA+RVPT N          +      ++N A + +  N +L G+LS  +EPLVSVDF                    ++K++ W DNEWG++ R++D A
Sbjct:  166 VIDEAFGVESGSITTIHSSMHDQQVIDAYHKDLRLSRAASQSIIPVDTKLAAGIERILPKFKGRFEAIAVRVPTINVTAMDLSLTVNNDVCICDINQAIQAATSNHDLYGVLSYTEEPLVSVDFNHDPHSCIVDGNQTRVSHKRLIKMLVWCDNEWGFANRMLDTA 331          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_DROSU (Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragment) OS=Drosophila subobscura GN=Gapdh2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.564e-13
Identity = 47/155 (30.32%), Postives = 64/155 (41.29%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNE 463
            V++  F I++G MTT H+ T  Q                   NI+P +T                  G+A RVPTPN           K    +E+ A  +E+A+  LKGIL   DE +VS DF                + D  VK+I+WYDNE
Sbjct:  150 VINDNFEIVEGLMTTVHATTATQKTVDGPSGKLWRDGRGAAQNIIPAATGAAKAVGKVIPALNGKLTGMAFRVPTPNVSVVDLTVRLGKGASYDEIKAKVQEAANGPLKGILGYTDEEVVSTDFLSDTHSSVFDAKAGISLNDKFVKLISWYDNE 304          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_VIBHB (D-erythrose-4-phosphate dehydrogenase OS=Vibrio harveyi (strain ATCC BAA-1116 / BB120) GN=epd PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 2.564e-13
Identity = 45/165 (27.27%), Postives = 65/165 (39.39%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            VLD+ FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          S      +VN     ++   L+ I+   + PLVS+DF                    +VK++ W DNEWG++ R++D A
Sbjct:  170 VLDEAFGIESGTITTIHSSMNDQQVIDAYHNDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTISTNVKVNDVNQTIVNASQCTLRDIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSNGQLVKMLVWCDNEWGFANRMLDTA 334          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_PHOPR (D-erythrose-4-phosphate dehydrogenase OS=Photobacterium profundum GN=epd PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 44/165 (26.67%), Postives = 65/165 (39.39%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            ++D  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N                 +VN A  E +   L+GI+   + PLVS+DF                    ++K++ W DNEWG++ R++D A
Sbjct:  171 IIDDAFGIESGTITTIHSAMNDQQVIDGYHSDLRRTRAASQSIIPVDTKLHLGIGRIFPKFVDKFEAISVRVPTINVTAMDLSVTVKTNVKVNDVNQALSEVSRCTLEGIVDYTEAPLVSIDFNHDPHSAIVDGTQTRVSNKHLIKLLVWCDNEWGFANRMLDTA 335          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_KLEP7 (D-erythrose-4-phosphate dehydrogenase OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=epd PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 46/163 (28.22%), Postives = 64/163 (39.26%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            +LD  +GI  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS DF                 G  ++K + W DNEWG++ R++D
Sbjct:  166 LLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKACEVNQLLQKAAQGAFHGIVDYTELPLVSTDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_KLEP3 (D-erythrose-4-phosphate dehydrogenase OS=Klebsiella pneumoniae (strain 342) GN=epd PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 3.348e-13
Identity = 46/163 (28.22%), Postives = 64/163 (39.26%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            +LD  +GI  GT+TT HS   DQ                  +I+P  T                   IA+RVPT N           K   A EVN   +++A     GI+   + PLVS DF                 G  ++K + W DNEWG++ R++D
Sbjct:  166 LLDDAYGIESGTVTTIHSAMHDQQVIDAYHPDLRRTRAASQSIIPVDTKLAAGITRIFPQFNDRFEAIAVRVPTINVTAIDLSVTVKKPVKACEVNQLLQKAAQGAFHGIVDYTELPLVSTDFNHDPHSAIVDGTQTRVSGAHLIKTLVWCDNEWGFANRMLD 328          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_CHLTR (Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamydia trachomatis GN=gap PE=3 SV=3)

HSP 1 Score: 74.3294 bits (181), Expect = 4.373e-13
Identity = 51/174 (29.31%), Postives = 70/174 (40.23%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANNWK 520
            VL   FGI +G MTT H+ T  Q                   NI+P ST                  G+A RVP  +          S  T  E +  A + +A+  +K I+   +E +VS DF                + D   K++AWYDNE GY+ R+VDL + V  N K
Sbjct:  161 VLLDNFGIEEGLMTTVHAATATQSVVDGPSRKDWRGGRGAFQNIIPASTGAAKAVGLCLPELKGKLTGMAFRVPVADVSVVDLTVKLSSATTYEAICEAVKHAANTSMKNIMYYTEEAVVSSDFIGCEYSSVFDAQAGVALNDRFFKLVAWYDNEIGYATRIVDLLEYVQENSK 334          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P1_GLORO (Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragment) OS=Globodera rostochiensis GN=GPD-1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.373e-13
Identity = 45/156 (28.85%), Postives = 66/156 (42.31%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEW 466
            V++ +FGII+G MTT H+ T  Q                   NI+P ST                  G+A RVPTPN           K    + + AA +++A+  LKGIL   ++ +VS DF                +    VK+++WYDNE+
Sbjct:  169 VINDEFGIIEGLMTTVHAVTATQKTVDGPNGKQWRDGRGAAQNIIPASTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTARLEKPASLDAIKAAVKKAAEGNLKGILGYTEDQVVSTDFLGDSRSSIFDAGACISLNPHFVKLVSWYDNEF 324          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_YERE8 (D-erythrose-4-phosphate dehydrogenase OS=Yersinia enterocolitica serotype O:8 / biotype 1B (strain 8081) GN=epd PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.373e-13
Identity = 44/163 (26.99%), Postives = 64/163 (39.26%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            +LD  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      EVN   +++A    +GI+   + PLVS DF                 G  ++K + W DNEWG++ R++D
Sbjct:  166 LLDVAFGIESGTVTTIHSSMNDQPVIDAYHQDLRRTRAASQSIIPVDTKLAAGITRIFPKFCDRFEAISVRVPTINVTAIDLSVSVTSPVDVAEVNQLLQKAARGSFRGIVDYTELPLVSTDFNHDPHSAIVDCTQTRVSGQHLIKTLVWCDNEWGFANRMLD 328          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_VIBPA (D-erythrose-4-phosphate dehydrogenase OS=Vibrio parahaemolyticus GN=epd PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.373e-13
Identity = 44/165 (26.67%), Postives = 65/165 (39.39%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            VLD+ FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      +VN     ++   L+ I+   + PLVS+DF                    +VK++ W DNEWG++ R++D A
Sbjct:  170 VLDEAFGIESGTITTIHSSMNDQQVIDAYHNDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDVNQTIVNASQCTLRNIVDYTESPLVSIDFNHDPHSAIVDGTQTRVSNGQLVKMLVWCDNEWGFANRMLDTA 334          
The following BLAST results are available for this feature:
BLAST of CX300377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
E4PD_COLP31.963e-1327.71D-erythrose-4-phosphate dehydrogenase OS=Colwellia... [more]
G3P2_DROSU2.564e-1330.32Glyceraldehyde-3-phosphate dehydrogenase 2 (Fragme... [more]
E4PD_VIBHB2.564e-1327.27D-erythrose-4-phosphate dehydrogenase OS=Vibrio ha... [more]
E4PD_PHOPR3.348e-1326.67D-erythrose-4-phosphate dehydrogenase OS=Photobact... [more]
E4PD_KLEP73.348e-1328.22D-erythrose-4-phosphate dehydrogenase OS=Klebsiell... [more]
E4PD_KLEP33.348e-1328.22D-erythrose-4-phosphate dehydrogenase OS=Klebsiell... [more]
G3P_CHLTR4.373e-1329.31Glyceraldehyde-3-phosphate dehydrogenase OS=Chlamy... [more]
G3P1_GLORO4.373e-1328.85Glyceraldehyde-3-phosphate dehydrogenase 1 (Fragme... [more]
E4PD_YERE84.373e-1326.99D-erythrose-4-phosphate dehydrogenase OS=Yersinia ... [more]
E4PD_VIBPA4.373e-1326.67D-erythrose-4-phosphate dehydrogenase OS=Vibrio pa... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07009E03SK SaltLeaf1 Citrus clementina cDNA clone C07009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300377 ID=CX300377; Name=CX300377; organism=Citrus clementina; type=EST; length=558bp
GGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACAC
ACTCGTACACTGGCGACCAAAGGCTACTCGATGCTAGCCACCGTGACCTC
AGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGC
GGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACG
GCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTC
GTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAG
AGAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGC
CCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATG
GTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACA
TTGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCT
GTAATCGG
back to top