CX300377

Overview
NameCX300377
Unique NameCX300377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_STAAM (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gapA2 PE=1 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 65/166 (39.16%), Postives = 81/166 (48.80%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 499
            VL+ +FGI+ G MTT H+ T DQ                  +I+PTST                 +G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  164 VLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_STAAC (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus aureus (strain COL) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 5.506e-24
Identity = 65/166 (39.16%), Postives = 81/166 (48.80%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 499
            VL+ +FGI+ G MTT H+ T DQ                  +I+PTST                 +G+ALRVPT N           K+  AEEVN AF  +    L+GI+ V  +PLVSVDF                M  + VKVIAWYDNEWGYS RVVD+A+
Sbjct:  164 VLNNQFGIVNGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPELEGKLHGMALRVPTKNVSLVDLVVDLEKEVTAEEVNQAFENAG---LEGIIEVEHQPLVSVDFNTNPNSAIIDAKSTMVMSGNKVKVIAWYDNEWGYSNRVVDVAE 326          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_STAEQ (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.227e-23
Identity = 64/166 (38.55%), Postives = 80/166 (48.19%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLAD 499
            VL+ KFGII G MTT H+ T DQ                  +I+PTST                 +G+ALRVPT N           +     +VN AF+ +   +L G+L V + PLVSVDF                MG + VKVIAWYDNEWGYS RVV++AD
Sbjct:  164 VLNDKFGIINGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPEVEGKLHGMALRVPTKNVSLVDLVVDLEQNVTVTQVNDAFKNA---DLSGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVMGQNKVKVIAWYDNEWGYSNRVVEVAD 326          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_STRCO (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces coelicolor GN=gap PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.602e-23
Identity = 61/171 (35.67%), Postives = 82/171 (47.95%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 511
            VLD+ FGI+KG MTT H+YT DQ                  NI+PT+T                 +GIA+RVP P            ++   +EVNAAF+++AD+ +LKGIL   ++ +VS D                      VK++ WYDNEWGYS R+VDL   V N
Sbjct:  164 VLDENFGIVKGLMTTVHAYTNDQRILDFPHKDLRRARAAAENIIPTTTGAAKATALVLPQLKGKLDGIAMRVPVPTGSATDLVVELQREVTKDEVNAAFKKAADDGDLKGILFYTEDAIVSSDITGDPASCTFDSSLTMVQEGKSVKILGWYDNEWGYSNRLVDLTVFVGN 334          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_STAES (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=gapA2 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 6.087e-23
Identity = 63/165 (38.18%), Postives = 79/165 (47.88%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            VL+ KFGII G MTT H+ T DQ                  +I+PTST                 +G+ALRVPT N           +     +VN AF+ +   +L G+L V + PLVSVDF                MG + VKVIAWYDNEWGYS RVV++A
Sbjct:  164 VLNDKFGIINGLMTTVHAITNDQKNIDNPHKDLRRARSCNESIIPTSTGAAKALKEVLPEVEGKLHGMALRVPTKNVSLVDLVVDLEQNVTVTQVNDAFKNA---DLSGVLDVEEAPLVSVDFNTNPHSAIIDSQSTMVMGQNKVKVIAWYDNEWGYSNRVVEVA 325          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_MYCLE (Glyceraldehyde-3-phosphate dehydrogenase OS=Mycobacterium leprae GN=gapA PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 7.951e-23
Identity = 61/171 (35.67%), Postives = 78/171 (45.61%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 514
            VL  +FGI+KG MTT H+YT DQ                  N+VPTST                 +G ALRVP P           SK     E+NA F+++A+  LKGIL   D P+VS D                 +     KV++WYDNEWGYS R+VDL  +V  +
Sbjct:  169 VLHDQFGIVKGLMTTVHAYTQDQNLQDGPHSDLRRARAAALNVVPTSTGAAKAIGLVMPELKGKLDGYALRVPIPTGSVTDLTADLSKCVSVNEINAVFQDAAEGRLKGILKYVDAPIVSSDIVTDPHSSIFDSGLTKVIA-SQAKVVSWYDNEWGYSNRLVDLVGLVGKS 338          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_ZYMMO (Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomonas mobilis GN=gap PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.356e-22
Identity = 57/166 (34.34%), Postives = 81/166 (48.80%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADN-ELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            VL QK GI++G MTT HS+T DQ                  +++PTST                 +GI++RVPTP+           + T AEE+N+  + +AD  ++ G+L   DEPLVS DF                +   + +V+AWYDNEWG+S R+VD A
Sbjct:  165 VLQQKIGIVRGLMTTVHSFTNDQRILDQIHSDLRRARTASASMIPTSTGAARAVALVIPELKGKLDGISIRVPTPDVSLVDFTFVPQRDTTAEEINSVLKAAADTGDMTGVLGYTDEPLVSRDFYSDPHSSTVDSRETAVLEGKLARVVAWYDNEWGFSNRMVDTA 330          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_THEAQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Thermus aquaticus GN=gap PE=1 SV=2)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 60/168 (35.71%), Postives = 81/168 (48.21%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 505
            VL++ FG+ K  MTT HSYT DQ                  NI+PT+T                 +G+ALRVPT             ++  AEEVNAA + +A+  LKGIL+  ++ +V  D                 +G+ MVKV AWYDNEWGY+ RV DL ++V
Sbjct:  160 VLEEAFGVEKALMTTVHSYTNDQRLLDLPHKDLRRARAAAINIIPTTTGAAKATALVLPSLKGRFDGMALRVPTATGSISDITALLKREVTAEEVNAALKAAAEGPLKGILAYTEDEIVLQDIVMDPHSSIVDAKLTKALGN-MVKVFAWYDNEWGYANRVADLVELV 326          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_RHOSH (Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhodobacter sphaeroides GN=gapB PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 3.021e-22
Identity = 59/165 (35.76%), Postives = 76/165 (46.06%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            VL    GI KG MTT HSYTGDQ                  +++PTST                 +G+++RVPTPN          ++ T  EEVNAA   +A   LKG+L    EP VS DF                M   MV++++WYDNEWG+S R+ D A
Sbjct:  162 VLHDAIGIAKGFMTTIHSYTGDQPTLDTMHKDLYRARAAALSMIPTSTGAAKAVGLVLPELKGRLDGVSIRVPTPNVSVVDLVFEAARDTTVEEVNAAIEAAACGPLKGVLGFTTEPNVSSDFNHDPHSSVFHMDQTKVMEGRMVRILSWYDNEWGFSNRMADTA 326          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_XANFL (Glyceraldehyde-3-phosphate dehydrogenase OS=Xanthobacter flavus GN=gap PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.499e-21
Identity = 57/165 (34.55%), Postives = 77/165 (46.67%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            VL+   GI KG MTT H+YTGDQ                  +++PTST                 +G ++RVPTPN           + T  EE+N A   +A  +LKGIL   D+P VS+DF                M   +V+V++WYDNEWG+S R+ D A
Sbjct:  164 VLNDAVGIEKGFMTTIHAYTGDQPTLDTMHKDLYRARAAAMSMIPTSTGAAKAVGLVLPELAGKLDGTSIRVPTPNVSVIDLKFVAKRATSKEEINEAIIAAASQQLKGILGFTDQPNVSIDFNHNPNSSTFHLDQTKVMEGTLVRVLSWYDNEWGFSNRMSDTA 328          
The following BLAST results are available for this feature:
BLAST of CX300377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
G3P2_STAAM5.506e-2439.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAAC5.506e-2439.16Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P2_STAEQ1.227e-2338.55Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_STRCO1.602e-2335.67Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P2_STAES6.087e-2338.18Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Stap... [more]
G3P_MYCLE7.951e-2335.67Glyceraldehyde-3-phosphate dehydrogenase OS=Mycoba... [more]
G3P_ZYMMO1.356e-2234.34Glyceraldehyde-3-phosphate dehydrogenase OS=Zymomo... [more]
G3P_THEAQ3.021e-2235.71Glyceraldehyde-3-phosphate dehydrogenase OS=Thermu... [more]
G3P2_RHOSH3.021e-2235.76Glyceraldehyde-3-phosphate dehydrogenase B OS=Rhod... [more]
G3P_XANFL1.499e-2134.55Glyceraldehyde-3-phosphate dehydrogenase OS=Xantho... [more]

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Properties
Property NameValue
Genbank descriptionC07009E03SK SaltLeaf1 Citrus clementina cDNA clone C07009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300377 ID=CX300377; Name=CX300377; organism=Citrus clementina; type=EST; length=558bp
GGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACAC
ACTCGTACACTGGCGACCAAAGGCTACTCGATGCTAGCCACCGTGACCTC
AGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGC
GGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACG
GCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTC
GTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAG
AGAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGC
CCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATG
GTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACA
TTGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCT
GTAATCGG
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