CX300377

Overview
NameCX300377
Unique NameCX300377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_EDWI9 (D-erythrose-4-phosphate dehydrogenase OS=Edwardsiella ictaluri (strain 93-146) GN=epd PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.837e-11
Identity = 42/163 (25.77%), Postives = 61/163 (37.42%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVD 490
            +LD  F I  G +TT HS   DQ                  +I+P  T                   I++RVPT N                E+VN   +++A     GI+   + PLVS DF                 G  ++K + W DNEWG++ R++D
Sbjct:  166 LLDDAFAIESGAVTTIHSSMNDQQVIDAYHPDLRRTRAASHSIIPVDTKLAAGIARVLPQFRDRFEAISVRVPTLNVTAIDLSVSVRTPVRVEQVNHLLQKAASTAFHGIVDYTELPLVSTDFNHDPHSAIVDGTQTRVSGRHLIKTLVWCDNEWGFANRMLD 328          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_ALISL (D-erythrose-4-phosphate dehydrogenase OS=Aliivibrio salmonicida (strain LFI1238) GN=epd PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.837e-11
Identity = 41/164 (25.00%), Postives = 62/164 (37.80%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            +D  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      ++N     ++   L  I+   + PLVS+DF                    +VK++ W DNEWG++ R++D A
Sbjct:  171 IDDAFGIESGTITTIHSAMNDQPVIDAYHTDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASQCTLHNIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTA 334          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_VIBFM (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain MJ11) GN=epd PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 41/164 (25.00%), Postives = 62/164 (37.80%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            +D  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      ++N     ++   L  I+   + PLVS+DF                    +VK++ W DNEWG++ R++D A
Sbjct:  171 IDDAFGIDSGTITTIHSSMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASRCTLHNIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTA 334          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: E4PD_VIBF1 (D-erythrose-4-phosphate dehydrogenase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=epd PE=3 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 3.134e-11
Identity = 41/164 (25.00%), Postives = 62/164 (37.80%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLA 496
            +D  FGI  GT+TT HS   DQ                  +I+P  T                   I++RVPT N          +      ++N     ++   L  I+   + PLVS+DF                    +VK++ W DNEWG++ R++D A
Sbjct:  171 IDDAFGIDSGTITTIHSSMNDQQVIDAYHSDLRRTRAASQSIIPVDTKLHKGIERIFPKFSNKFEAISVRVPTVNVTAMDLSVTINTNVKVNDINQTIVNASRCTLHNIVDYTEAPLVSIDFNHDPHSAIVDGSQTRVSNGHLVKMLVWCDNEWGFANRMLDTA 334          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_STRP8 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M18 GN=gap PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 48/166 (28.92%), Postives = 66/166 (39.76%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM---GDDMVKVIAWYDNEWGYSQRVV 487
            L   FGI KG MTT H+YTGDQ                    NIVP ST                 +G A RVP P            K    +E+NAA + ++++         ++P+VS D                 M   G  +VKV++WYDNE  Y+ ++V
Sbjct:  164 LHDAFGIQKGLMTTIHAYTGDQMILDGPHRGGDLRRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLV 325          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_STRP6 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M6 GN=gap PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 48/166 (28.92%), Postives = 66/166 (39.76%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM---GDDMVKVIAWYDNEWGYSQRVV 487
            L   FGI KG MTT H+YTGDQ                    NIVP ST                 +G A RVP P            K    +E+NAA + ++++         ++P+VS D                 M   G  +VKV++WYDNE  Y+ ++V
Sbjct:  164 LHDAFGIQKGLMTTIHAYTGDQMILDGPHRGGDLRRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLV 325          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_STRP3 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M3 GN=gap PE=3 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 48/166 (28.92%), Postives = 66/166 (39.76%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM---GDDMVKVIAWYDNEWGYSQRVV 487
            L   FGI KG MTT H+YTGDQ                    NIVP ST                 +G A RVP P            K    +E+NAA + ++++         ++P+VS D                 M   G  +VKV++WYDNE  Y+ ++V
Sbjct:  164 LHDAFGIQKGLMTTIHAYTGDQMILDGPHRGGDLRRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLV 325          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_STRP1 (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus pyogenes serotype M1 GN=gap PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 48/166 (28.92%), Postives = 66/166 (39.76%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM---GDDMVKVIAWYDNEWGYSQRVV 487
            L   FGI KG MTT H+YTGDQ                    NIVP ST                 +G A RVP P            K    +E+NAA + ++++         ++P+VS D                 M   G  +VKV++WYDNE  Y+ ++V
Sbjct:  164 LHDAFGIQKGLMTTIHAYTGDQMILDGPHRGGDLRRARAGAANIVPNSTGAAKAIGLVIPELNGKLDGAAQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLV 325          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_STREQ (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptococcus equisimilis GN=gap PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 48/166 (28.92%), Postives = 66/166 (39.76%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQ--XXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXM---GDDMVKVIAWYDNEWGYSQRVV 487
            L   FGI KG MTT H+YTGDQ                    NIVP ST                 +G A RVP P            K    +E+NAA + ++++         ++P+VS D                 M   G  +VKV++WYDNE  Y+ ++V
Sbjct:  164 LHDAFGIQKGLMTTIHAYTGDQMIVDGHRGGGDLRRARAGAANIVPNSTGARKAIGLVIPELNGKLDGAAQRVPVPTGSVTELVVTLDKNVSVDEINAAMKAASNDS----FGYTEDPIVSSDIVGVSYGSLFDATQTKVMEVDGSQLVKVVSWYDNEMSYTAQLV 325          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_SEROD (Glyceraldehyde-3-phosphate dehydrogenase (Fragment) OS=Serratia odorifera GN=gap PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 5.345e-11
Identity = 43/149 (28.86%), Postives = 63/149 (42.28%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVI 445
            V++ KFGI++  MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K    +EV AA +E+A+ ELKG+L   ++ +VS DF                + D+ VK++
Sbjct:  146 VINDKFGIVEALMTTVHATTATQKTVDGPFHKDWRGGRGASQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPNVSVVDLTARLEKPASYKEVCAAIKEAAEGELKGVLGYTEDDVVSTDFNGEKLTSVFDAKAGIALNDNFVKLV 294          
The following BLAST results are available for this feature:
BLAST of CX300377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
E4PD_EDWI91.837e-1125.77D-erythrose-4-phosphate dehydrogenase OS=Edwardsie... [more]
E4PD_ALISL1.837e-1125.00D-erythrose-4-phosphate dehydrogenase OS=Aliivibri... [more]
E4PD_VIBFM3.134e-1125.00D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
E4PD_VIBF13.134e-1125.00D-erythrose-4-phosphate dehydrogenase OS=Vibrio fi... [more]
G3P_STRP85.345e-1128.92Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP65.345e-1128.92Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP35.345e-1128.92Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STRP15.345e-1128.92Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_STREQ5.345e-1128.92Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_SEROD5.345e-1128.86Glyceraldehyde-3-phosphate dehydrogenase (Fragment... [more]

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Properties
Property NameValue
Genbank descriptionC07009E03SK SaltLeaf1 Citrus clementina cDNA clone C07009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300377 ID=CX300377; Name=CX300377; organism=Citrus clementina; type=EST; length=558bp
GGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACAC
ACTCGTACACTGGCGACCAAAGGCTACTCGATGCTAGCCACCGTGACCTC
AGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGC
GGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACG
GCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTC
GTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAG
AGAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGC
CCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATG
GTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACA
TTGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCT
GTAATCGG
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