CX300377

Overview
NameCX300377
Unique NameCX300377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:798..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_PODAN (Glyceraldehyde-3-phosphate dehydrogenase OS=Podospora anserina GN=GPD PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.499e-21
Identity = 58/170 (34.12%), Postives = 80/170 (47.06%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 508
            V++ KFGI++G MTT HSYT  Q                   NI+P+ST                  G+A RVPT N           K    E + AA +E+++ ELKGIL   ++ +VS D                 + D+ VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  162 VVNDKFGIVEGLMTTVHSYTATQKTVDGPSAKDWRGGRGAAQNIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTSNVSVVDLTCRLEKPASYETIKAALKEASEGELKGILGYTEDEIVSSDLNGNANSSIFDAKAGISLNDNFVKLVSWYDNEWGYSRRVLDLLSYVA 331          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_ASPNG (Glyceraldehyde-3-phosphate dehydrogenase OS=Aspergillus niger GN=gpdA PE=3 SV=2)

HSP 1 Score: 102.449 bits (254), Expect = 1.499e-21
Identity = 56/165 (33.94%), Postives = 80/165 (48.48%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            V++ KFGI++G MTT HSYT  Q                   NI+P+ST                  G+A+RVPT N           K T  +E+  A +++++NELKGIL   ++ +VS D                 +  + VK+++WYDNEWGYS+RVVDL
Sbjct:  162 VINDKFGIVEGLMTTVHSYTATQKVVDAPSSKDWRGGRTAAQNIIPSSTGAAKAVGKVIPTLNGKLTGMAMRVPTSNVSVVDLTCRLEKATSYDEIKKALKDASENELKGILGYTEDDIVSSDLNGDDHSSIFDAKAGIALNSNFVKLVSWYDNEWGYSRRVVDL 326          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P1_SYNY3 (Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Synechocystis sp. (strain PCC 6803) GN=gap1 PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 1.958e-21
Identity = 58/165 (35.15%), Postives = 77/165 (46.67%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            +LD  FGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPTPN           K T  EE+ AA + +A+ ELKGIL    + +VS+DFR               +  +  KV++WYDNEWGYS RV+DL
Sbjct:  164 ILDDNFGIVEGLMTTVHAMTATQPTVDGPSKKDFRGGRGAAQNIIPSSTGAAKAAALVLPQLKGKLTGMAFRVPTPNVSVVDLTFKTEKATSYEEICAAMKTAAEGELKGILGYTADDVVSMDFRTDPRSSIFDAGAGIGLNSNFFKVVSWYDNEWGYSCRVIDL 328          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_BACFR (Glyceraldehyde-3-phosphate dehydrogenase OS=Bacteroides fragilis GN=gap PE=3 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 5.698e-21
Identity = 56/170 (32.94%), Postives = 80/170 (47.06%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 508
            VL+ KFGI+KG MTT H+ T  Q                   NI+P+ST                  G+A RVPT +           K     E+NAA +E+++ ELKGIL   ++ +VS DFR               +  +  KV++WYDNEWGYS +V ++A ++A
Sbjct:  162 VLNDKFGIVKGLMTTVHAATATQKTVDGPSKKDWRGGRGILENIIPSSTGAAKAVGKVLPVLNGKLTGMAFRVPTSDVSVVDLTVVLEKAATMAEINAAMKEASEGELKGILGYTEDAVVSTDFRGCANTSIYDSKAGISLDSNFAKVVSWYDNEWGYSNKVCEMARVIA 331          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3PP_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGP PE=3 SV=1)

HSP 1 Score: 99.7525 bits (247), Expect = 9.719e-21
Identity = 59/169 (34.91%), Postives = 78/169 (46.15%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 511
            L +K G++ G MTT HSYT DQ                  +++PT T                 +G A+RVPT N          ++ T  EEVN   + +A+ ELKGIL     PLVSVDF                 G  +VKV AWYDNEWG+S R++D A  +A+
Sbjct:  167 LHEKLGVVNGLMTTVHSYTNDQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGLVMPELDGRLDGFAVRVPTINVSLVDLSFVAARPTTVEEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATLTKVNG-TLVKVSAWYDNEWGFSNRMLDTAVALAH 334          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3PC_RALEH (Glyceraldehyde-3-phosphate dehydrogenase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbGC PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.269e-20
Identity = 59/169 (34.91%), Postives = 78/169 (46.15%), Query Frame = 2
Query:    5 LDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVAN 511
            L +K G++ G MTT HSYT DQ                  +++PT T                 +G A+RVPT N          ++ T  EEVN   + +A+ ELKGIL     PLVSVDF                 G  +VKV AWYDNEWG+S R++D A  +A+
Sbjct:  167 LHEKLGLVNGLMTTVHSYTNDQVLTDVYHEDLRRARSATMSMIPTKTGAAAAVGLVMPELDGRLDGFAVRVPTINVSLVDLSFVAARPTTVEEVNGILKAAAEGELKGILDYNTAPLVSVDFNHNPASSTFDATLTKVNG-TLVKVSAWYDNEWGFSNRMLDTAVALAH 334          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3PC_HORVU (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic (Fragment) OS=Hordeum vulgare GN=GAPC PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 1.269e-20
Identity = 56/165 (33.94%), Postives = 78/165 (47.27%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            V++ +FGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPT +          +K    E++ AA +E ++  LKGIL   DE LVS DF+               + D+ VK+++WYDNEWGYS RVVDL
Sbjct:  133 VINDRFGIVEGLMTTVHAMTATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPELNGKLTGMAFRVPTVDVSVVDLTVRLAKPATYEQIKAAIKEESEGNLKGILGYVDEDLVSTDFQGDSRSSIFDAKAGIALNDNFVKLVSWYDNEWGYSTRVVDL 297          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3PC_GINBI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Ginkgo biloba PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.165e-20
Identity = 54/165 (32.73%), Postives = 78/165 (47.27%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            V++ +FGI++G MTT HS T  Q                   NI+P+ST                  G+A RVPTP+           K    +E+ AA +E ++ +LKGIL   ++ +VS DF                + D+ VK+++WYDNEWGYS RV+DL
Sbjct:  168 VINDRFGIVEGLMTTVHSITATQKTVDGPSNKDWRGGRGAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTPDVSVVDLTVRLEKPASYDEIKAAIKEESEGKLKGILGYTEDDVVSTDFIGDNRSSIFDAKAGIALSDNFVKLVSWYDNEWGYSSRVIDL 332          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_COCP7 (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides posadasii (strain C735) GN=GPD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.828e-20
Identity = 53/170 (31.18%), Postives = 80/170 (47.06%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 508
            V++  FG+++G MTT HSYT  Q                   NI+P+ST                  G+++RVPT N           K    +++  A ++++ NELKGI+S  ++ LVS D                 + D  +K++AWYDNEWGYS+RV+DL   +A
Sbjct:  162 VVNDNFGLVEGLMTTVHSYTATQKTVDGPSSKDWRGGRTAAQNIIPSSTGAAKAVGKVIPSLNGKLTGMSMRVPTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDPHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_COCIM (Glyceraldehyde-3-phosphate dehydrogenase OS=Coccidioides immitis GN=GPD PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.828e-20
Identity = 53/170 (31.18%), Postives = 80/170 (47.06%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 508
            V++  FG+++G MTT HSYT  Q                   NI+P+ST                  G+++RVPT N           K    +++  A ++++ NELKGI+S  ++ LVS D                 + D  +K++AWYDNEWGYS+RV+DL   +A
Sbjct:  162 VVNDNFGLVEGLMTTVHSYTATQKTVDGPSSKDWRGGRAAAQNIIPSSTGAAKAVGKVIPSLNGKLTGMSMRVPTSNVSVVDLTCRTDKSVTYDQIKEAMKKASANELKGIMSYSEDALVSSDLNGDTHSCIFDATAGIALNDHFIKLVAWYDNEWGYSRRVIDLIAYIA 331          
The following BLAST results are available for this feature:
BLAST of CX300377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
G3P_PODAN1.499e-2134.12Glyceraldehyde-3-phosphate dehydrogenase OS=Podosp... [more]
G3P_ASPNG1.499e-2133.94Glyceraldehyde-3-phosphate dehydrogenase OS=Asperg... [more]
G3P1_SYNY31.958e-2135.15Glyceraldehyde-3-phosphate dehydrogenase 1 OS=Syne... [more]
G3P_BACFR5.698e-2132.94Glyceraldehyde-3-phosphate dehydrogenase OS=Bacter... [more]
G3PP_RALEH9.719e-2134.91Glyceraldehyde-3-phosphate dehydrogenase, plasmid ... [more]
G3PC_RALEH1.269e-2034.91Glyceraldehyde-3-phosphate dehydrogenase, chromoso... [more]
G3PC_HORVU1.269e-2033.94Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_GINBI2.165e-2032.73Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_COCP72.828e-2031.18Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]
G3P_COCIM2.828e-2031.18Glyceraldehyde-3-phosphate dehydrogenase OS=Coccid... [more]

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Properties
Property NameValue
Genbank descriptionC07009E03SK SaltLeaf1 Citrus clementina cDNA clone C07009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300377 ID=CX300377; Name=CX300377; organism=Citrus clementina; type=EST; length=558bp
GGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACAC
ACTCGTACACTGGCGACCAAAGGCTACTCGATGCTAGCCACCGTGACCTC
AGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGC
GGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACG
GCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTC
GTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAG
AGAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGC
CCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATG
GTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACA
TTGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCT
GTAATCGG
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