CX300377

Overview
NameCX300377
Unique NameCX300377
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length558
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig5796 contig Ccv1_Contig5796:798..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3PC_DIACA (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Dianthus caryophyllus GN=GAPC PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 5.333e-19
Identity = 53/165 (32.12%), Postives = 77/165 (46.67%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            V++ +FGI++G MTT HS T  Q                   NI+P+ST                  G++ RVPT +           K    E+V AA +E ++ +LKGIL   ++ +VS DF                + D+ +K+++WYDNEWGYS RVVDL
Sbjct:  165 VINDRFGIVEGLMTTVHSITATQKTVDGPSMKDWRGGRAASFNIIPSSTGAAKAVGKVLPSLNGKLTGMSFRVPTVDVSVVDLTVRIEKPATYEQVKAAIKEESEGKLKGILGYTEDDVVSTDFVGDNRSSIFDAKAGIALNDNFIKLVSWYDNEWGYSTRVVDL 329          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_MASBA (Glyceraldehyde-3-phosphate dehydrogenase OS=Mastigamoeba balamuthi GN=GAPD PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 57/165 (34.55%), Postives = 74/165 (44.85%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            V++ KFGI++G MTT HS T  Q                   NI+P+ST                  G++ RVPT N                EE+  A RE+A+ ELKG+L   DE +VS DF                +    VK+++WYDNEWGYS RVVDL
Sbjct:  167 VINDKFGIVRGLMTTVHSTTATQKTVDGPSGKAWRDGRAAAGNIIPSSTGAAKAVTAVIPELKGRLTGMSFRVPTLNVSVVDLTAELKTPATYEEICNAVREAANGELKGVLGYTDEQVVSSDFVGEPMSSIFDAKAGIALDKTFVKLVSWYDNEWGYSNRVVDL 331          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3PE_MAIZE (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic 3 OS=Zea mays GN=GAPC3 PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 54/165 (32.73%), Postives = 75/165 (45.45%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            V++ KFGI++G MTT H+ T  Q                   NI+P+ST                  G++ RVPT +           K    +E+ AA +  A+  LKGIL   +E LVS DF+               +  + VK+++WYDNEWGYS RVVDL
Sbjct:  165 VINDKFGIVEGLMTTVHAITATQKTVDGPSSKDWRGGRAASFNIIPSSTGAAKAVGKVLPVLNGKLTGMSFRVPTVDVSVVDLTVRLEKSATYDEIKAAVKAEAEGSLKGILGYVEEDLVSTDFQGDSRSSIFDAKAGIALNGNFVKLVSWYDNEWGYSTRVVDL 329          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3PC_MAGLI (Glyceraldehyde-3-phosphate dehydrogenase, cytosolic OS=Magnolia liliiflora GN=GAPC PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 6.965e-19
Identity = 55/169 (32.54%), Postives = 76/169 (44.97%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIV 505
            V++ KFGI++G MTT HS T  Q                   NI+P+ST                  G+A RVPT +           K    EE+ A  +  ++ +LKGIL   +E +VS DF                + +  VK+++WYDNEWGYS RV+DL  IV
Sbjct:  167 VINDKFGIVEGLMTTVHSITATQKTVDGPSSKDWRGGRAAGFNIIPSSTGAAKAVGKVLPALNGKLTGMAFRVPTVDVSVVDLTVRLEKAASYEEIKAVIKAESEGKLKGILGYTEEDVVSTDFIGDNRSSIFDAKAGIALNEHFVKLVSWYDNEWGYSSRVIDLILIV 335          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_COLGL (Glyceraldehyde-3-phosphate dehydrogenase OS=Colletotrichum gloeosporioides GN=GPDA PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 53/170 (31.18%), Postives = 80/170 (47.06%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 508
            V++ KFGI++G MTT HSYT  Q                   NI+P+ST                   +++RVPT N           K    +E+  A +E+A+  LKG+L+  ++ +VS D                 + ++ VK+++WYDNEWGYS+RV+DL   VA
Sbjct:  163 VINDKFGIVEGLMTTVHSYTATQKTVHGPSAKDWRGGRTAAQNIIPSSTGAAKAVGKVIPELNGKLTDMSMRVPTTNVSVVDLTARIEKGASYDEIKQAIKEAAEGPLKGVLAYTEDDVVSTDMIGNPNSSIFDAKAGISLNNNFVKLVSWYDNEWGYSRRVLDLLAHVA 332          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P2_RHIRA (Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhizomucor racemosus GN=GPD2 PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 9.097e-19
Identity = 53/165 (32.12%), Postives = 77/165 (46.67%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            V++  FGI++G MTT H+ T  Q                   NI+P+ST                  G+A RVPTP+           K    EE+ A  +++++NELKGIL   ++ +VS DF                + D  VK+++WYDNE+GYS RV+DL
Sbjct:  162 VINDNFGIVEGLMTTVHATTATQKTVDGPSNKDWRGGRGAGANIIPSSTGAAKAVGKVIPELNGKLTGMAFRVPTPDVSVVDLTVRLEKGATYEEIKAVIKKASENELKGILGYTNDQVVSTDFVGDAQSSIFDAAAGIALNDKFVKLVSWYDNEFGYSNRVIDL 326          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_STRAE (Glyceraldehyde-3-phosphate dehydrogenase OS=Streptomyces arenae GN=gap PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.188e-18
Identity = 57/171 (33.33%), Postives = 72/171 (42.11%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXNIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVANN 514
            VL    GI  G MTT H+YT DQ                  NIVPTS+                 +  ALRVP P            + T  EEV  A+  +A    KG+LS  D PLVS D                 +    VKV+ WYDNEWGYS R++DLA ++ ++
Sbjct:  164 VLHDAVGIDSGMMTTVHAYTQDQNLQDAPHKDLRRARAAALNIVPTSSGAAKAIGLVLPELAGRLDAFALRVPVPTGSVTDLTVTTRRGTSVEEVKEAYAAAASGPYKGLLSYVDAPLVSTDI--VGDPASLFDAGLTRVCGPQVKVVGWYDNEWGYSNRLIDLATLIGSS 332          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_OMPOL (Glyceraldehyde-3-phosphate dehydrogenase OS=Omphalotus olearius GN=GPD PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.188e-18
Identity = 56/170 (32.94%), Postives = 77/170 (45.29%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXXN-IVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 508
            V+  KFGI++G M+T H+ T  Q                  N I+P+ST                  G++ RVPT +           K+   +E+ AA +E+    LKGIL   ++ LVS DF                +  + VK+IAWYDNEWGYS+RVVDL   VA
Sbjct:  162 VIHDKFGIVEGLMSTIHATTATQKTVDGPSNKDWRGGRSVNNNIIPSSTGAAKAVGKVIPSLNGKLTGLSFRVPTLDVSVVDLVVRLEKEATYDEIKAAVKEAVAGPLKGILDYTEDALVSTDFTGNTHSSIFDASAGIALNKNFVKLIAWYDNEWGYSRRVVDLITFVA 331          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_ATRNU (Glyceraldehyde-3-phosphate dehydrogenase OS=Atriplex nummularia PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.188e-18
Identity = 52/165 (31.52%), Postives = 77/165 (46.67%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDL 493
            V++ KFGI++G MTT HS T  Q                   NI+P+ST                  G++ RVPT +           K+   E++ AA +E ++ ++KGIL   ++ +VS DF                +  + VK+++WYDNEWGYS RVVDL
Sbjct:  165 VINDKFGIVEGLMTTVHSITATQKTVDGPSAKDWRGGRAASFNIIPSSTGAAKAVGKVLPALNGKLTGMSFRVPTVDVSVVDLTVRLEKEATYEQIKAAIKEESEGKMKGILGYTEDDVVSTDFVGDNRSSIFDAKAGICLNGNFVKLVSWYDNEWGYSSRVVDL 329          
BLAST of CX300377 vs. ExPASy Swiss-Prot
Match: G3P_AJECA (Glyceraldehyde-3-phosphate dehydrogenase OS=Ajellomyces capsulata GN=GPD PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.188e-18
Identity = 52/170 (30.59%), Postives = 77/170 (45.29%), Query Frame = 2
Query:    2 VLDQKFGIIKGTMTTTHSYTGDQXXXXXXXXXXXXXXXXXX-NIVPTSTXXXXXXXXXXXXXXXXXNGIALRVPTPNXXXXXXXXXXSKKTFAEEVNAAFRESADNELKGILSVCDEPLVSVDFRCXXXXXXXXXXXXXXMGDDMVKVIAWYDNEWGYSQRVVDLADIVA 508
            V++  FG+ +G MTT HSYT  Q                   NI+P+ST                  G+++RVPT N           K    +++    +++++ ELKGIL   ++ LVS D                 + D  +K+I+WYDNEWGYS+RVVDL   +A
Sbjct:  162 VINDNFGLTEGLMTTIHSYTATQKTVDGPSSKDWRGGRTAAQNIIPSSTGAAKAVGKVIPSLNGKLTGMSMRVPTANVSVVDLTCKTEKPVTYDQIKQTIKKASEGELKGILGYSEDALVSSDLNGDSRSSIFDASAGIALNDHFIKLISWYDNEWGYSRRVVDLIAYIA 331          
The following BLAST results are available for this feature:
BLAST of CX300377 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 321
Match NameE-valueIdentityDescription
G3PC_DIACA5.333e-1932.12Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_MASBA6.965e-1934.55Glyceraldehyde-3-phosphate dehydrogenase OS=Mastig... [more]
G3PE_MAIZE6.965e-1932.73Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3PC_MAGLI6.965e-1932.54Glyceraldehyde-3-phosphate dehydrogenase, cytosoli... [more]
G3P_COLGL9.097e-1931.18Glyceraldehyde-3-phosphate dehydrogenase OS=Collet... [more]
G3P2_RHIRA9.097e-1932.12Glyceraldehyde-3-phosphate dehydrogenase 2 OS=Rhiz... [more]
G3P_STRAE1.188e-1833.33Glyceraldehyde-3-phosphate dehydrogenase OS=Strept... [more]
G3P_OMPOL1.188e-1832.94Glyceraldehyde-3-phosphate dehydrogenase OS=Omphal... [more]
G3P_ATRNU1.188e-1831.52Glyceraldehyde-3-phosphate dehydrogenase OS=Atripl... [more]
G3P_AJECA1.188e-1830.59Glyceraldehyde-3-phosphate dehydrogenase OS=Ajello... [more]

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Properties
Property NameValue
Genbank descriptionC07009E03SK SaltLeaf1 Citrus clementina cDNA clone C07009E03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300377 ID=CX300377; Name=CX300377; organism=Citrus clementina; type=EST; length=558bp
GGTTCTTGACCAGAAGTTTGGCATTATCAAGGGAACCATGACCACCACAC
ACTCGTACACTGGCGACCAAAGGCTACTCGATGCTAGCCACCGTGACCTC
AGGCGTGCAAGAGCAGCTGCACTCAACATTGTCCCAACATCAACTGGTGC
GGCAAAAGCTGTGGCCCTTGTCCTCCCAGCACTCAAAGGCAAACTAAACG
GCATTGCCCTTCGTGTGCCAACACCAAACGTCTCGGTTGTTGATCTTGTC
GTTCAGGTGTCGAAGAAAACCTTCGCAGAAGAGGTGAACGCCGCTTTCAG
AGAAAGCGCTGACAATGAACTGAAAGGGATCCTCTCCGTGTGCGACGAGC
CCCTCGTTTCGGTCGACTTCAGGTGCTCTGATGTATCCTCAACCGTTGAT
TCATCTCTCACACTTGTCATGGGAGACGACATGGTTAAGGTGATTGCATG
GTATGACAATGAATGGGGTTACTCTCAAAGGGTTGTGGATTTGGCCGACA
TTGTTGCCAACAACTGGAAGTGAAGTAAATACTAAAATCGGAACTCGGCT
GTAATCGG
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