CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_GLUDA (50S ribosomal protein L18 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplR PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20
Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = 2
Query:   77 STRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            ST+   +   R     ++R+K  G   RPRL VFRS K++Y QVIDD    TLA+AS++ K + ++L   +G   + +  VG+++A+  +  G++ V FDRG Y YHGRI+ALA+AARE GL F
Sbjct:    2 STQQDLRERRRQRLRFQLRRKGGG---RPRLSVFRSGKNIYAQVIDDVAGRTLAAASSLDKALREQL--KTGADSDAAVAVGKLVAERAVAAGVSLVVFDRGSYMYHGRIKALAEAAREGGLAF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_DEIGD (50S ribosomal protein L18 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplR PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20
Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 2
Query:  116 RHSRIRKKI-DGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  R R+K+ +   ERPRL VFRSNKH+Y Q+IDD    TLA+AS+            +G   + +  VG  +A++ + KG+ +V FDRG Y YHGR++ALA+AARE GL F
Sbjct:    9 RKLRARRKVREAAGERPRLSVFRSNKHIYAQIIDDRSGTTLAAASSSA--------VKTGTKTDTAAAVGRALAEAAVAKGVKQVVFDRGAYKYHGRVKALAEAAREGGLDF 112          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CHLCH (50S ribosomal protein L18 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplR PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20
Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 2
Query:  104 DRTARHSRIRKK----IDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            D+ AR  +I+ +    + GT  +PRLC++RS   +Y Q+IDD    TL +ASTM K          G   + S+ VG+ IA+  L  GIT V FDR G+ YHGR++ALAD ARE GL F
Sbjct:    5 DKAARRQKIKDRSRVSVQGTASKPRLCIYRSLAEMYAQLIDDVNGKTLVTASTMTK----NNKAFEGTKSDASRIVGQQIAEKALAAGITNVVFDRNGFRYHGRVKALADGAREAGLIF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AGRRK (50S ribosomal protein L18 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplR PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20
Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +++E    R +R+R+++      RPRL V RS+K++YVQVIDD    TLASAST+ K +   L   +G     +  VG+++A+   + G+ +V FDRG + YHGRI+ALA+AARE GL F
Sbjct:    3 SRKEALARRANRVRRQLKSVANGRPRLSVHRSSKNIYVQVIDDAAGKTLASASTLDKDLRGSL--KTGADTAAAALVGKLVAERATKAGVKEVVFDRGAFIYHGRIKALAEAAREGGLSF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHESW (50S ribosomal protein L18 OS=Shewanella sp. (strain W3-18-1) GN=rplR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R  R RKKI       RL V R+ +H+Y QVI+  +   +A+AST++K + ++L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GLQF
Sbjct:    3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQF 116          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHESR (50S ribosomal protein L18 OS=Shewanella sp. (strain MR-7) GN=rplR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R  R RKKI       RL V R+ +H+Y QVI+  +   +A+AST++K + ++L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GLQF
Sbjct:    3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQF 116          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHESM (50S ribosomal protein L18 OS=Shewanella sp. (strain MR-4) GN=rplR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20
Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R  R RKKI       RL V R+ +H+Y QVI+  +   +A+AST++K + ++L   S   ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GLQF
Sbjct:    3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQF 116          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHESH (50S ribosomal protein L18 OS=Shewanella sediminis (strain HAW-EB3) GN=rplR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20
Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R RKKI       RL V R+ +H Y QVI       LA+AST +K ++++L Y+    ++ +K VG+ +A+  +EKG+T VAFDR G+ YHGR+ ALADAARE GL+F
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHTYAQVISPDSQ-VLAAASTAEKAVTEQLKYTGN--VDAAKAVGKTVAERAIEKGVTVVAFDRSGFKYHGRVAALADAAREAGLKF 116          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHESA (50S ribosomal protein L18 OS=Shewanella sp. (strain ANA-3) GN=rplR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20
Identity = 55/118 (46.61%), Postives = 77/118 (65.25%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R  R RKKI       RL V R+ +H+Y QVI+  +   +A+AST++K + ++L   S   ++ +K VG+ IA+  +EKG+T VAFDR G+ YHGR+ ALADAARE GLQF
Sbjct:    3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFIAERAIEKGVTTVAFDRSGFKYHGRVAALADAAREAGLQF 116          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHEPW (50S ribosomal protein L18 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplR PE=3 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20
Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R RKKI       RL V R+ +H Y QVI    +  LA+AST +K +S++L Y+    ++ +K VG+ +A+  +EKG+  VAFDR G+ YHGR+ ALADAARE GL+F
Sbjct:    3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHTYAQVISPANV-VLAAASTAEKAVSEQLKYTGN--VDAAKAVGKTVAERAIEKGVAVVAFDRSGFKYHGRVAALADAAREAGLKF 116          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_GLUDA1.630e-2043.5550S ribosomal protein L18 OS=Gluconacetobacter dia... [more]
RL18_DEIGD1.630e-2046.4350S ribosomal protein L18 OS=Deinococcus geotherma... [more]
RL18_CHLCH1.630e-2044.5450S ribosomal protein L18 OS=Chlorobium chlorochro... [more]
RL18_AGRRK1.630e-2044.1750S ribosomal protein L18 OS=Agrobacterium radioba... [more]
RL18_SHESW2.129e-2045.7650S ribosomal protein L18 OS=Shewanella sp. (strai... [more]
RL18_SHESR2.129e-2045.7650S ribosomal protein L18 OS=Shewanella sp. (strai... [more]
RL18_SHESM2.129e-2045.7650S ribosomal protein L18 OS=Shewanella sp. (strai... [more]
RL18_SHESH2.129e-2045.7650S ribosomal protein L18 OS=Shewanella sediminis ... [more]
RL18_SHESA2.129e-2046.6150S ribosomal protein L18 OS=Shewanella sp. (strai... [more]
RL18_SHEPW2.129e-2045.7650S ribosomal protein L18 OS=Shewanella piezotoler... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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