CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_GLUDA (50S ribosomal protein L18 OS=Gluconacetobacter diazotrophicus (strain ATCC 49037 / DSM 5601 / PAl5) GN=rplR PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20 Identity = 54/124 (43.55%), Postives = 79/124 (63.71%), Query Frame = 2 Query: 77 STRPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 ST+ + R ++R+K G RPRL VFRS K++Y QVIDD TLA+AS++ K + ++L +G + + VG+++A+ + G++ V FDRG Y YHGRI+ALA+AARE GL F Sbjct: 2 STQQDLRERRRQRLRFQLRRKGGG---RPRLSVFRSGKNIYAQVIDDVAGRTLAAASSLDKALREQL--KTGADSDAAVAVGKLVAERAVAAGVSLVVFDRGSYMYHGRIKALAEAAREGGLAF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_DEIGD (50S ribosomal protein L18 OS=Deinococcus geothermalis (strain DSM 11300) GN=rplR PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20 Identity = 52/112 (46.43%), Postives = 71/112 (63.39%), Query Frame = 2 Query: 116 RHSRIRKKI-DGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R R R+K+ + ERPRL VFRSNKH+Y Q+IDD TLA+AS+ +G + + VG +A++ + KG+ +V FDRG Y YHGR++ALA+AARE GL F Sbjct: 9 RKLRARRKVREAAGERPRLSVFRSNKHIYAQIIDDRSGTTLAAASSSA--------VKTGTKTDTAAAVGRALAEAAVAKGVKQVVFDRGAYKYHGRVKALAEAAREGGLDF 112
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CHLCH (50S ribosomal protein L18 OS=Chlorobium chlorochromatii (strain CaD3) GN=rplR PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20 Identity = 53/119 (44.54%), Postives = 71/119 (59.66%), Query Frame = 2 Query: 104 DRTARHSRIRKK----IDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 D+ AR +I+ + + GT +PRLC++RS +Y Q+IDD TL +ASTM K G + S+ VG+ IA+ L GIT V FDR G+ YHGR++ALAD ARE GL F Sbjct: 5 DKAARRQKIKDRSRVSVQGTASKPRLCIYRSLAEMYAQLIDDVNGKTLVTASTMTK----NNKAFEGTKSDASRIVGQQIAEKALAAGITNVVFDRNGFRYHGRVKALADGAREAGLIF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_AGRRK (50S ribosomal protein L18 OS=Agrobacterium radiobacter (strain K84 / ATCC BAA-868) GN=rplR PE=3 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 1.630e-20 Identity = 53/120 (44.17%), Postives = 78/120 (65.00%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +++E R +R+R+++ RPRL V RS+K++YVQVIDD TLASAST+ K + L +G + VG+++A+ + G+ +V FDRG + YHGRI+ALA+AARE GL F Sbjct: 3 SRKEALARRANRVRRQLKSVANGRPRLSVHRSSKNIYVQVIDDAAGKTLASASTLDKDLRGSL--KTGADTAAAALVGKLVAERATKAGVKEVVFDRGAFIYHGRIKALAEAAREGGLSF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHESW (50S ribosomal protein L18 OS=Shewanella sp. (strain W3-18-1) GN=rplR PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20 Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R R RKKI RL V R+ +H+Y QVI+ + +A+AST++K + ++L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GLQF Sbjct: 3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQF 116
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHESR (50S ribosomal protein L18 OS=Shewanella sp. (strain MR-7) GN=rplR PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20 Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R R RKKI RL V R+ +H+Y QVI+ + +A+AST++K + ++L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GLQF Sbjct: 3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQF 116
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHESM (50S ribosomal protein L18 OS=Shewanella sp. (strain MR-4) GN=rplR PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20 Identity = 54/118 (45.76%), Postives = 77/118 (65.25%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R R RKKI RL V R+ +H+Y QVI+ + +A+AST++K + ++L S ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GLQF Sbjct: 3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFVAERAIEKGVTSVAFDRSGFKYHGRVAALADAAREAGLQF 116
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHESH (50S ribosomal protein L18 OS=Shewanella sediminis (strain HAW-EB3) GN=rplR PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20 Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R RKKI RL V R+ +H Y QVI LA+AST +K ++++L Y+ ++ +K VG+ +A+ +EKG+T VAFDR G+ YHGR+ ALADAARE GL+F Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHTYAQVISPDSQ-VLAAASTAEKAVTEQLKYTGN--VDAAKAVGKTVAERAIEKGVTVVAFDRSGFKYHGRVAALADAAREAGLKF 116
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHESA (50S ribosomal protein L18 OS=Shewanella sp. (strain ANA-3) GN=rplR PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20 Identity = 55/118 (46.61%), Postives = 77/118 (65.25%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R R RKKI RL V R+ +H+Y QVI+ + +A+AST++K + ++L S ++ +K VG+ IA+ +EKG+T VAFDR G+ YHGR+ ALADAARE GLQF Sbjct: 3 KKTSRLRRAIRARKKIQELGVN-RLVVHRTPRHIYAQVINP-EAQVVAAASTVEKAVKEQL--KSTGNVDAAKAVGKFIAERAIEKGVTTVAFDRSGFKYHGRVAALADAAREAGLQF 116
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_SHEPW (50S ribosomal protein L18 OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=rplR PE=3 SV=1) HSP 1 Score: 98.2117 bits (243), Expect = 2.129e-20 Identity = 54/118 (45.76%), Postives = 76/118 (64.41%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R RKKI RL V R+ +H Y QVI + LA+AST +K +S++L Y+ ++ +K VG+ +A+ +EKG+ VAFDR G+ YHGR+ ALADAARE GL+F Sbjct: 3 KKTSRLRRATRARKKIQELGVN-RLVVHRTPRHTYAQVISPANV-VLAAASTAEKAVSEQLKYTGN--VDAAKAVGKTVAERAIEKGVAVVAFDRSGFKYHGRVAALADAAREAGLKF 116 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |