CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_RHOBA (50S ribosomal protein L18 OS=Rhodopirellula baltica GN=rplR PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = 2
Query:  107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            R  R   +R K+ G+ ++PRLC+ R+ KH   QV+DD    TL SAST  K + D++   +G   + +  VG+++A+   E G+  V  DRG   YHGR++A ADAARE GLQF
Sbjct:   11 RLRRRRHVRNKLRGSADQPRLCIQRTLKHFACQVVDDQAGKTLLSASTRDKTVRDQV--KAGGNCDAAALVGKLVAEKAAEAGVKTVKLDRGHNKYHGRVKAFADAAREAGLQF 122          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_RHIEC (50S ribosomal protein L18 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +++E    R +R+R+ I      RPRL V RS+K++Y Q+IDD    TLASAST+ K +   L   +G     +  VG+++A+   + G+T V FDRG + YHGRI+ALA+AARE GL F
Sbjct:    3 SRKEALARRANRVRRHIKSVANGRPRLSVHRSSKNIYAQIIDDVAGKTLASASTLDKDLRGSL--KTGADTAAAAAVGKLVAERASKAGVTDVVFDRGAFIYHGRIKALAEAAREGGLTF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_RHIE6 (50S ribosomal protein L18 OS=Rhizobium etli (strain CIAT 652) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 2
Query:   92 TKREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            +++E    R +R+R+ I      RPRL V RS+K++Y Q+IDD    TLASAST++K +   L   +G     +  VG+++A+   + G+++V FDRG + YHGRI+ALA+AARE GL F
Sbjct:    3 SRKEALARRANRVRRHIKSVANGRPRLSVHRSSKNIYAQIIDDVAGKTLASASTLEKDLRGSL--KTGADTAAAAAVGKLVAERASKAGVSEVVFDRGAFIYHGRIKALAEAAREGGLTF 120          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_PARL1 (50S ribosomal protein L18 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 2
Query:  158 RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            RPRL VFRS+KH+Y QVIDDT+  T+A+AS++ +    +    +G  +  + +VG+++A+   + GIT V FDRGGY YHGR++ALA+ ARE GL F
Sbjct:   26 RPRLSVFRSSKHIYAQVIDDTRGVTVAAASSLDEKFGKK----AGTDVAAAGEVGKLLAQRAKDAGITDVVFDRGGYIYHGRVKALAEGAREGGLNF 118          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_NITEU (50S ribosomal protein L18 OS=Nitrosomonas europaea GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 2
Query:   98 REDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            ++ R  R    R KI G   + RL V +SN H+Y Q++D +    + SAST++  +  +  Y SG TIE +K VG ++AK  +E  I +VAFDR G+ YHGRI+ALADAAR  G++F
Sbjct:    6 KQMRLRRAKATRIKI-GNSRQFRLSVHKSNNHIYAQILDPSSNRVIVSASTVEAEVKKQ--YPSGGTIEAAKYVGHLVAKKSIESQIYEVAFDRSGFKYHGRIKALADAARSAGMKF 119          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_KLEP7 (50S ribosomal protein L18 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ESCF3 (50S ribosomal protein L18 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECOUT (50S ribosomal protein L18 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECOSM (50S ribosomal protein L18 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECOSE (50S ribosomal protein L18 OS=Escherichia coli (strain SE11) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_RHOBA2.780e-2042.9850S ribosomal protein L18 OS=Rhodopirellula baltic... [more]
RL18_RHIEC2.780e-2044.1750S ribosomal protein L18 OS=Rhizobium etli (strai... [more]
RL18_RHIE62.780e-2043.3350S ribosomal protein L18 OS=Rhizobium etli (strai... [more]
RL18_PARL12.780e-2049.4850S ribosomal protein L18 OS=Parvibaculum lavament... [more]
RL18_NITEU2.780e-2044.4450S ribosomal protein L18 OS=Nitrosomonas europaea... [more]
RL18_KLEP72.780e-2044.9250S ribosomal protein L18 OS=Klebsiella pneumoniae... [more]
RL18_ESCF32.780e-2044.9250S ribosomal protein L18 OS=Escherichia fergusoni... [more]
RL18_ECOUT2.780e-2044.9250S ribosomal protein L18 OS=Escherichia coli (str... [more]
RL18_ECOSM2.780e-2044.9250S ribosomal protein L18 OS=Escherichia coli (str... [more]
RL18_ECOSE2.780e-2044.9250S ribosomal protein L18 OS=Escherichia coli (str... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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