CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_RHOBA (50S ribosomal protein L18 OS=Rhodopirellula baltica GN=rplR PE=3 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 49/114 (42.98%), Postives = 70/114 (61.40%), Query Frame = 2 Query: 107 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 R R +R K+ G+ ++PRLC+ R+ KH QV+DD TL SAST K + D++ +G + + VG+++A+ E G+ V DRG YHGR++A ADAARE GLQF Sbjct: 11 RLRRRRHVRNKLRGSADQPRLCIQRTLKHFACQVVDDQAGKTLLSASTRDKTVRDQV--KAGGNCDAAALVGKLVAEKAAEAGVKTVKLDRGHNKYHGRVKAFADAAREAGLQF 122
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_RHIEC (50S ribosomal protein L18 OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/120 (44.17%), Postives = 76/120 (63.33%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +++E R +R+R+ I RPRL V RS+K++Y Q+IDD TLASAST+ K + L +G + VG+++A+ + G+T V FDRG + YHGRI+ALA+AARE GL F Sbjct: 3 SRKEALARRANRVRRHIKSVANGRPRLSVHRSSKNIYAQIIDDVAGKTLASASTLDKDLRGSL--KTGADTAAAAAVGKLVAERASKAGVTDVVFDRGAFIYHGRIKALAEAAREGGLTF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_RHIE6 (50S ribosomal protein L18 OS=Rhizobium etli (strain CIAT 652) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 52/120 (43.33%), Postives = 78/120 (65.00%), Query Frame = 2 Query: 92 TKREDRTARHSRIRKKIDGTPE-RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 +++E R +R+R+ I RPRL V RS+K++Y Q+IDD TLASAST++K + L +G + VG+++A+ + G+++V FDRG + YHGRI+ALA+AARE GL F Sbjct: 3 SRKEALARRANRVRRHIKSVANGRPRLSVHRSSKNIYAQIIDDVAGKTLASASTLEKDLRGSL--KTGADTAAAAAVGKLVAERASKAGVSEVVFDRGAFIYHGRIKALAEAAREGGLTF 120
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_PARL1 (50S ribosomal protein L18 OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 48/97 (49.48%), Postives = 69/97 (71.13%), Query Frame = 2 Query: 158 RPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 RPRL VFRS+KH+Y QVIDDT+ T+A+AS++ + + +G + + +VG+++A+ + GIT V FDRGGY YHGR++ALA+ ARE GL F Sbjct: 26 RPRLSVFRSSKHIYAQVIDDTRGVTVAAASSLDEKFGKK----AGTDVAAAGEVGKLLAQRAKDAGITDVVFDRGGYIYHGRVKALAEGAREGGLNF 118
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_NITEU (50S ribosomal protein L18 OS=Nitrosomonas europaea GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 52/117 (44.44%), Postives = 74/117 (63.25%), Query Frame = 2 Query: 98 REDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 ++ R R R KI G + RL V +SN H+Y Q++D + + SAST++ + + Y SG TIE +K VG ++AK +E I +VAFDR G+ YHGRI+ALADAAR G++F Sbjct: 6 KQMRLRRAKATRIKI-GNSRQFRLSVHKSNNHIYAQILDPSSNRVIVSASTVEAEVKKQ--YPSGGTIEAAKYVGHLVAKKSIESQIYEVAFDRSGFKYHGRIKALADAARSAGMKF 119
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_KLEP7 (50S ribosomal protein L18 OS=Klebsiella pneumoniae subsp. pneumoniae (strain ATCC 700721 / MGH 78578) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ESCF3 (50S ribosomal protein L18 OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECOUT (50S ribosomal protein L18 OS=Escherichia coli (strain UTI89 / UPEC) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECOSM (50S ribosomal protein L18 OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECOSE (50S ribosomal protein L18 OS=Escherichia coli (strain SE11) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |