CX300380

Overview
NameCX300380
Unique NameCX300380
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length495
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO81 (50S ribosomal protein L18 OS=Escherichia coli O81 (strain ED1a) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO7I (50S ribosomal protein L18 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO5E (50S ribosomal protein L18 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO57 (50S ribosomal protein L18 OS=Escherichia coli O157:H7 GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO55 (50S ribosomal protein L18 OS=Escherichia coli (strain 55989 / EAEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO45 (50S ribosomal protein L18 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO27 (50S ribosomal protein L18 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO24 (50S ribosomal protein L18 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CITK8 (50S ribosomal protein L18 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2
Query:   95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448
            K+  R  R +R R+K+       RL V R+ +H+Y QVI       L +AST++K I+++L Y+     + +  VG+ +A+  LEKGI  V+FDR G+ YHGR+QALADAARE GLQF
Sbjct:    3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117          
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BORBZ (50S ribosomal protein L18 OS=Borrelia burgdorferi (strain ZS7) GN=rplR PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20
Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 2
Query:  116 RHSRIRKKID-GTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 442
            R  RI+ KI  G   RPR+ VF+SN++ Y QVIDD+K HT+AS ST++K ++       G  I+  KK+GE++AK   EK I  + FDR GY YHG I + A + RE+G+
Sbjct:   14 RKKRIKDKIGRGVASRPRITVFKSNRYFYAQVIDDSKGHTIASISTIEKSLN------LGKNIDDVKKLGEVLAKRLKEKNINNLIFDRNGYKYHGLIASFATSLREFGI 117          
The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RL18_ECO812.780e-2044.9250S ribosomal protein L18 OS=Escherichia coli O81 ... [more]
RL18_ECO7I2.780e-2044.9250S ribosomal protein L18 OS=Escherichia coli O7:K... [more]
RL18_ECO5E2.780e-2044.9250S ribosomal protein L18 OS=Escherichia coli O157... [more]
RL18_ECO572.780e-2044.9250S ribosomal protein L18 OS=Escherichia coli O157... [more]
RL18_ECO552.780e-2044.9250S ribosomal protein L18 OS=Escherichia coli (str... [more]
RL18_ECO452.780e-2044.9250S ribosomal protein L18 OS=Escherichia coli O45:... [more]
RL18_ECO272.780e-2044.9250S ribosomal protein L18 OS=Escherichia coli O127... [more]
RL18_ECO242.780e-2044.9250S ribosomal protein L18 OS=Escherichia coli O139... [more]
RL18_CITK82.780e-2044.9250S ribosomal protein L18 OS=Citrobacter koseri (s... [more]
RL18_BORBZ2.780e-2046.3650S ribosomal protein L18 OS=Borrelia burgdorferi ... [more]

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Properties
Property NameValue
Genbank descriptionC07009E09SK SaltLeaf1 Citrus clementina cDNA clone C07009E09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bp
ACTTTCGAGTGTTTCAAAATTAGTGGCAAGCAGAAGGCCAAGGCCAGCAC
CGCCATCTCTTTTCATCGTCGAAGCCTCGACCAGACCAAGAACCAAAAGA
GAGGACCGCACTGCCCGCCATTCTCGCATCAGAAAGAAGATTGATGGGAC
TCCTGAGAGGCCGAGGCTGTGTGTTTTCCGCTCCAACAAGCATCTCTATG
TCCAGGTGATTGATGATACTAAGATGCACACACTTGCTTCAGCTTCGACG
ATGCAGAAGCCCATCTCTGACGAGCTTGACTATAGTTCTGGTCCGACGAT
TGAAGTTTCAAAGAAGGTGGGTGAAATGATTGCAAAGTCATGTTTGGAGA
AGGGGATCACAAAAGTAGCCTTTGATCGAGGTGGGTACCCATACCATGGA
CGGATACAAGCCCTAGCCGATGCAGCTCGGGAATATGGTCTTCAATTCTA
AGAACTATGTAGTCAATTGTTCATTTTTTTCCAAAAATCCATTTC
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