CX300380
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO81 (50S ribosomal protein L18 OS=Escherichia coli O81 (strain ED1a) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO7I (50S ribosomal protein L18 OS=Escherichia coli O7:K1 (strain IAI39 / ExPEC) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO5E (50S ribosomal protein L18 OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO57 (50S ribosomal protein L18 OS=Escherichia coli O157:H7 GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO55 (50S ribosomal protein L18 OS=Escherichia coli (strain 55989 / EAEC) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO45 (50S ribosomal protein L18 OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO27 (50S ribosomal protein L18 OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_ECO24 (50S ribosomal protein L18 OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_CITK8 (50S ribosomal protein L18 OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 53/118 (44.92%), Postives = 75/118 (63.56%), Query Frame = 2 Query: 95 KREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGLQF 448 K+ R R +R R+K+ RL V R+ +H+Y QVI L +AST++K I+++L Y+ + + VG+ +A+ LEKGI V+FDR G+ YHGR+QALADAARE GLQF Sbjct: 3 KKSARIRRATRARRKLQELGAT-RLVVHRTPRHIYAQVIAPNGSEVLVAASTVEKAIAEQLKYTGNK--DAAAAVGKAVAERALEKGIKDVSFDRSGFQYHGRVQALADAAREAGLQF 117
BLAST of CX300380 vs. ExPASy Swiss-Prot
Match: RL18_BORBZ (50S ribosomal protein L18 OS=Borrelia burgdorferi (strain ZS7) GN=rplR PE=3 SV=1) HSP 1 Score: 97.8265 bits (242), Expect = 2.780e-20 Identity = 51/110 (46.36%), Postives = 71/110 (64.55%), Query Frame = 2 Query: 116 RHSRIRKKID-GTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAKSCLEKGITKVAFDRGGYPYHGRIQALADAAREYGL 442 R RI+ KI G RPR+ VF+SN++ Y QVIDD+K HT+AS ST++K ++ G I+ KK+GE++AK EK I + FDR GY YHG I + A + RE+G+ Sbjct: 14 RKKRIKDKIGRGVASRPRITVFKSNRYFYAQVIDDSKGHTIASISTIEKSLN------LGKNIDDVKKLGEVLAKRLKEKNINNLIFDRNGYKYHGLIASFATSLREFGI 117 The following BLAST results are available for this feature:
BLAST of CX300380 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 500
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300380 ID=CX300380; Name=CX300380; organism=Citrus clementina; type=EST; length=495bpback to top |