CX300382

Overview
NameCX300382
Unique NameCX300382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length306
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1050..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.077e-25
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  210 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.077e-25
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  191 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.077e-25
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  212 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.077e-25
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   70 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
[Close]
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 1.077e-25
Identity = 54/55 (98.18%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  212 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.406e-25
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  212 VKEIKNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB22_PEA (Chlorophyll a-b binding protein AB80, chloroplastic OS=Pisum sativum GN=AB80 PE=1 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 1.406e-25
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  215 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 269
[Close]
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.837e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  210 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
[Close]
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.837e-25
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
[Close]
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.837e-25
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2 
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267
The following BLAST results are available for this feature:
BLAST of CX300382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB22_HORVU1.077e-2598.18Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN1.077e-2598.18Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_SINAL1.077e-2598.18Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_RAPSA1.077e-2598.18Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_PETSP1.077e-2598.18Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_NICPL1.406e-2596.36Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB22_PEA1.406e-2596.36Chlorophyll a-b binding protein AB80, chloroplasti... [more]
CB48_MAIZE1.837e-2596.36Chlorophyll a-b binding protein 48, chloroplastic ... [more]
CB2F_SOLLC1.837e-2596.36Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC1.837e-2596.36Chlorophyll a-b binding protein 3A, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07009E11SK SaltLeaf1 Citrus clementina cDNA clone C07009E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300382 ID=CX300382; Name=CX300382; organism=Citrus clementina; type=EST; length=306bp
GGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTT
TCTTTGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCC
GACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAA
CTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCG
GTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATT
TGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAA
AAAAAA
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