CX300382

Overview
NameCX300382
Unique NameCX300382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length306
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1050..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 1.837e-25
Identity = 53/55 (96.36%), Postives = 55/55 (100.00%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  210 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 114.005 bits (284), Expect = 2.399e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.133e-25
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  214 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB25_TOBAC (Chlorophyll a-b binding protein 50, chloroplastic OS=Nicotiana tabacum GN=CAB50 PE=2 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.133e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VK IKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  213 VKHIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 267          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.133e-25
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  213 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 3.133e-25
Identity = 52/55 (94.55%), Postives = 55/55 (100.00%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKE+KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  213 VKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.092e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  209 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 113.235 bits (282), Expect = 4.092e-25
Identity = 52/54 (96.30%), Postives = 54/54 (100.00%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 163
            VKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  208 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 5.344e-25
Identity = 53/55 (96.36%), Postives = 54/55 (98.18%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  213 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 6.979e-25
Identity = 52/55 (94.55%), Postives = 54/55 (98.18%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKE+KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  174 VKELKNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
The following BLAST results are available for this feature:
BLAST of CX300382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB23_APIGR1.837e-2596.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB27_TOBAC2.399e-2596.36Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB28_PEA3.133e-2594.55Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB25_TOBAC3.133e-2596.36Chlorophyll a-b binding protein 50, chloroplastic ... [more]
CB22_ARATH3.133e-2594.55Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH3.133e-2594.55Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB23_SOYBN4.092e-2596.36Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE4.092e-2596.30Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB2A_SPIOL5.344e-2596.36Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PEA6.979e-2594.55Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]

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Properties
Property NameValue
Genbank descriptionC07009E11SK SaltLeaf1 Citrus clementina cDNA clone C07009E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300382 ID=CX300382; Name=CX300382; organism=Citrus clementina; type=EST; length=306bp
GGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTT
TCTTTGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCC
GACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAA
CTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCG
GTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATT
TGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAA
AAAAAA
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