CX300382

Overview
NameCX300382
Unique NameCX300382
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length306
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1050..1355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 2.031e-24
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  183 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.652e-24
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:   96 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.652e-24
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKE+K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  211 VKELKKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.652e-24
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  212 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 110.538 bits (275), Expect = 2.652e-24
Identity = 51/55 (92.73%), Postives = 54/55 (98.18%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  210 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 110.538 bits (275), Expect = 2.652e-24
Identity = 52/55 (94.55%), Postives = 53/55 (96.36%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.908e-24
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 5.908e-24
Identity = 51/55 (92.73%), Postives = 52/55 (94.55%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKE+KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  202 VKELKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB21_WHEAT (Chlorophyll a-b binding protein, chloroplastic OS=Triticum aestivum GN=WHAB1.6 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 7.716e-24
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGPLE+LADH+ADPVNNNAW  ATNFVPGK
Sbjct:  212 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLEDLADHIADPVNNNAWLIATNFVPGK 266          
BLAST of CX300382 vs. ExPASy Swiss-Prot
Match: CB24_SOLLC (Chlorophyll a-b binding protein 4, chloroplastic OS=Solanum lycopersicum GN=CAB4 PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 1.008e-23
Identity = 50/55 (90.91%), Postives = 53/55 (96.36%), Query Frame = 2
Query:    2 VKEIKNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 166
            VKEIKNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ DPV NNAWAYATNFVPGK
Sbjct:  211 VKEIKNGRLAMFSMFGFFVQAIVTGKGPIENLSDHINDPVANNAWAYATNFVPGK 265          
The following BLAST results are available for this feature:
BLAST of CX300382 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 67
Match NameE-valueIdentityDescription
CB25_SOLLC2.031e-2492.73Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_PINSY2.652e-2494.55Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_MAIZE2.652e-2492.73Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB21_PINTH2.652e-2494.55Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI2.652e-2492.73Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI2.652e-2494.55Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB23_TOBAC5.908e-2492.73Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB22_SOYBN5.908e-2492.73Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_WHEAT7.716e-2492.73Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB24_SOLLC1.008e-2390.91Chlorophyll a-b binding protein 4, chloroplastic O... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07009E11SK SaltLeaf1 Citrus clementina cDNA clone C07009E11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300382 ID=CX300382; Name=CX300382; organism=Citrus clementina; type=EST; length=306bp
GGTTAAGGAAATCAAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTT
TCTTTGTTCAGGCCATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCC
GACCACTTGGCTGACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAA
CTTTGTCCCCGGAAAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCG
GTTTCTTGGATATCATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATT
TGAGTTGTGATTATTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAA
AAAAAA
back to top