CX300396
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSJ (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. japonica GN=CSLH2 PE=2 SV=3) HSP 1 Score: 167.162 bits (422), Expect = 5.221e-41 Identity = 84/195 (43.08%), Postives = 114/195 (58.46%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDE---------VMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHG----SGLGDYFCSVYVVLCFFPFLRGL 548 FRQCLAYL +L W LR+ ELCY L YCI+TN +FLPK E +PLALF+ Y Y +EY+ GLS R+WW N+ M RI++ SAW + L+ G SE VFE+T K SD D+ FD P F+P T + ++++ A G R+ A G G+G++ C ++VLCFFPF+RG+ Sbjct: 537 FRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGI 731
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLH2_ORYSI (Cellulose synthase-like protein H2 OS=Oryza sativa subsp. indica GN=CSLH2 PE=2 SV=1) HSP 1 Score: 167.162 bits (422), Expect = 5.221e-41 Identity = 84/195 (43.08%), Postives = 114/195 (58.46%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVDE---------VMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHG----SGLGDYFCSVYVVLCFFPFLRGL 548 FRQCLAYL +L W LR+ ELCY L YCI+TN +FLPK E +PLALF+ Y Y +EY+ GLS R+WW N+ M RI++ SAW + L+ G SE VFE+T K SD D+ FD P F+P T + ++++ A G R+ A G G+G++ C ++VLCFFPF+RG+ Sbjct: 537 FRQCLAYLIVLGWPLRAPFELCYGLLGPYCILTNQSFLPKASEDGFSVPLALFISYNTYNFMEYMACGLSARAWWNNHRMQRIISVSAWTLAFLTVLLKSLGLSETVFEVTGKDKSMSDDDDNTDGADPGRFTFDSLPVFIPVTALAMLNIVAVTVGACRVAFGTAEGVPCAPGIGEFMCCGWLVLCFFPFVRGI 731
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLH3_ORYSJ (Putative cellulose synthase-like protein H3 OS=Oryza sativa subsp. japonica GN=CSLH3 PE=3 SV=3) HSP 1 Score: 155.221 bits (391), Expect = 2.053e-37 Identity = 82/202 (40.59%), Postives = 112/202 (55.45%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSD----VDEV-----MFDDSPFFVPGTTIILVHLAAWATGLLR----LQSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569 FRQCLAYL + W +R ELCY L YC++TN +FL K E I LALFL Y Y +EY++ GLS+R+WW N+ M RI++ SAWL L+ G SE VFE+T+K +SD DEV FD SP F+P T + ++++ A G R G G+ ++ +++LC PF+RGL G G Sbjct: 568 FRQCLAYLTLYVWAVRGFVELCYELLVPYCLLTNQSFLSKASENCFNITLALFLTYNTYNFVEYMECGLSVRAWWNNHRMQRIISASAWLLAFFTVLLKTIGLSETVFEVTRKEKSTSDGNGQNDEVDPERFTFDASPVFIPVTALTMLNIVAITIGTWRAVFGTTEDVPGGPGISEFMSCGWLLLCLLPFVRGLVGKGSYG 769
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB4_ARATH (Cellulose synthase-like protein B4 OS=Arabidopsis thaliana GN=CSLB4 PE=2 SV=1) HSP 1 Score: 154.451 bits (389), Expect = 3.502e-37 Identity = 88/207 (42.51%), Postives = 121/207 (58.45%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSS------------------DVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569 FRQ LAYL++ +WGLRSIPEL Y LPAYC++ NS PK ++I L I+ LYTL E++ G SI+SW+V RI TT +WLF +++ L+ G S+ VF +T+K + D + FD S +F+PGT I+LV+LAA A L+ LQS+ GSGL + + VV+ F PFL+G+F GK G Sbjct: 528 FRQSLAYLYVFSWGLRSIPELFYCLLPAYCLLHNSALFPKGVYLGIIITLVG--IHCLYTLWEFMNLGFSIQSWYVTQSFGRIKTTCSWLFSVLDVILKLLGISKTVFIVTKKTMPETKSGSGSKKSQREVDCPNQDSGKFEFDGSLYFLPGTFIVLVNLAALAGCLVGLQSRGGGGSGLAEACGCILVVILFLPFLKGMFEKGKYG 732
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLH1_ORYSJ (Cellulose synthase-like protein H1 OS=Oryza sativa subsp. japonica GN=CSLH1 PE=2 SV=2) HSP 1 Score: 149.443 bits (376), Expect = 1.127e-35 Identity = 80/202 (39.60%), Postives = 112/202 (55.45%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSSDVD---------EVMFDDSPFFVPGTTIILVHLAAWATGLLRL----QSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569 FRQCLAYL W +R+ ELCY L YC+++N +FLPK E I LALF+ Y Y +E+I+ G S R+ W N+ M RI + SAWL + L+ GFSE VFE+T+K +SD D FD+S F+P T + ++ + A A G R+ G G+ ++ ++VLCF P LRGL +G+ G Sbjct: 526 FRQCLAYLHSYVWPVRAPFELCYALLGPYCLLSNQSFLPKTSEDGFYIALALFIAYNTYMFMEFIECGQSARACWNNHRMQRITSASAWLLAFLTVILKTLGFSETVFEVTRKDKSTSDGDSNTDEPEPGRFTFDESTVFIPVTALAMLSVIAIAVGAWRVVLVTTEGLPGGPGISEFISCGWLVLCFMPLLRGLVGSGRYG 727
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB3_ARATH (Cellulose synthase-like protein B3 OS=Arabidopsis thaliana GN=CSLB3 PE=2 SV=1) HSP 1 Score: 142.895 bits (359), Expect = 1.054e-33 Identity = 82/207 (39.61%), Postives = 117/207 (56.52%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIH------------------RSSDVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQSQCAHGSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569 FRQ LAYL+I TWGLRSIPEL Y LPAYC++ N+ PK +++ L ++ LY+L E++ G S++SW+ + RI TT +WLF + + L+ G S+ VF +T+K + D + FD S +F+PGT I+LV+LAA A + LQ GSGL + + VV+ F PFL+G+F GK G Sbjct: 528 FRQSLAYLYIFTWGLRSIPELIYCLLPAYCLLHNAALFPKGVYLGIVV--TLVGMHCLYSLWEFMSLGFSVQSWFASQSFWRIKTTCSWLFSIPDIILKLLGISKTVFIVTKKTMPKTMSGSGSEKSQREVDCPNQDSGKFEFDGSLYFLPGTFILLVNLAALAGCSVGLQRHRGGGSGLAEACGCILVVILFLPFLKGMFEKGKYG 732
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB1_ARATH (Cellulose synthase-like protein B1 OS=Arabidopsis thaliana GN=CSLB1 PE=2 SV=2) HSP 1 Score: 137.887 bits (346), Expect = 3.392e-32 Identity = 92/211 (43.60%), Postives = 122/211 (57.82%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQK------------------IHRSSDVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAH---GSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569 FRQ LAYL I+T LRSIPEL Y LPAYC++ NST PK + I + L I+ LYTL E++ G S++SW V+ + RIV TS+WLF + + L+ G SE VF IT+K + +SD+ + FD S F+PGT I+LV++AA A + LQ S +H GSGL + V V++ F PFL GLF GK G Sbjct: 529 FRQRLAYLCIITC-LRSIPELIYCLLPAYCLLHNSTLFPKGLY--LGITVTLVGIHCLYTLWEFMSLGYSVQSWLVSQSVWRIVATSSWLFSIFDITLKLLGISETVFIITKKTVAGTKSALGSGPSQGEDVGPNSDLFKFEFDGSLCFLPGTFIVLVNIAALAVFSVGLQRSSYSHEGGGSGLAEACGCVLVMMLFLPFLMGLFKKGKYG 736
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB5_ARATH (Cellulose synthase-like protein B5 OS=Arabidopsis thaliana GN=CSLB5 PE=2 SV=2) HSP 1 Score: 133.65 bits (335), Expect = 6.397e-31 Identity = 84/209 (40.19%), Postives = 120/209 (57.42%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEI-------TQKIHRSS-----------DVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAH---GSGLGDYFCSVYVVLCFFPFLRGLFMTGK 563 FRQ LAY W L LRSIPEL Y LPAYC++ +S PK P + + L ++ LY+L +++ G S++SW+V + RI+ TS+WLF + + L+ G S+ F I T+ ++ S ++ + FD S F+PGT I+LV+LAA A L+RLQ S C+H GSGL + + VV+ F PFL+GLF GK Sbjct: 527 FRQRLAYFWALMC-LRSIPELIYCLLPAYCLLHDSALFPK--GPCLCTIVTLVGMHCLYSLWQFMSLGFSVQSWYVVQSLWRIIATSSWLFSIQDIILKLLGISQIGFVIAKKTIPETKSVYESKPSQGEDDVPKLNLGKFEFDSSGLFIPGTFIMLVNLAALAGYLVRLQRSSCSHGGGGSGLAEACGCILVVMLFLPFLKGLFEHGK 732
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB6_ARATH (Cellulose synthase-like protein B6 OS=Arabidopsis thaliana GN=CSLB6 PE=2 SV=2) HSP 1 Score: 133.265 bits (334), Expect = 8.355e-31 Identity = 83/214 (38.79%), Postives = 119/214 (55.61%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKIHRSS--------------------DVDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAHGSGLGDYFCS----VYVVLCFFPFLRGLFMTGKKG 569 FRQ LAY W+L +RSIPEL Y LPAYC++ NS PK P + I + L ++ LYTL +++ G S++SW+V+ + RI+ TS+WLF + + L+ G S+ F + +K + ++ + FD S F+PGT I+LV+LAA A L+RLQ S +HG G G +V+ FFPFL+GLF GK G Sbjct: 526 FRQRLAYFWVLMC-IRSIPELVYCLLPAYCLLNNSALFPK--GPCLGIIVTLVGMHCLYTLWQFMILGFSVKSWYVSQSLWRIIATSSWLFSIQDIILKLLGISKIGFIVAKKNMPETRSGYESKSKPSQGEDDGLKLELGKFEFDSSCHFIPGTFIMLVNLAALAGFLVRLQRSSYSHGGGGGSALAETCGCAMIVMLFFPFLKGLFEHGKYG 736
BLAST of CX300396 vs. ExPASy Swiss-Prot
Match: CSLB2_ARATH (Cellulose synthase-like protein B2 OS=Arabidopsis thaliana GN=CSLB2 PE=2 SV=1) HSP 1 Score: 128.257 bits (321), Expect = 2.688e-29 Identity = 86/210 (40.95%), Postives = 119/210 (56.67%), Query Frame = 3 Query: 3 FRQCLAYLWILTWGLRSIPELCYIALPAYCIITNSTFLPKVQEPTVLIPLALFLIYKLYTLLEYIQAGLSIRSWWVNNCMARIVTTSAWLFGLVNAALEQFGFSEAVFEITQKI--------------HRSSD---VDEVMFDDSPFFVPGTTIILVHLAAWATGLLRLQ-SQCAH---GSGLGDYFCSVYVVLCFFPFLRGLFMTGKKG 569 FRQ +AYL + +RSIPEL Y LPAYC++ NS PK + I + L ++ LYTL E++ G SI+SW+V+ RIV TS+WLF + + L+ G S+ VF +++K R D + FD S +F+PGT I+LV+LAA + LQ S +H GSGLG+ + VV+ FFPFL+GLF GK G Sbjct: 528 FRQRVAYLCVSIC-VRSIPELIYCLLPAYCLLHNSALFPKGL--CLGITMLLAGMHCLYTLWEFMCLGHSIQSWYVSQSFWRIVATSSWLFSIFDIILKLLGLSKNVFLVSKKTMPVETMSGSGIGPSQREDDGPNSGKTEFDGSLYFLPGTFIVLVNLAALVGVFVGLQRSSYSHGGGGSGLGEACACILVVMLFFPFLKGLFAKGKYG 734 The following BLAST results are available for this feature:
BLAST of CX300396 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 35
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300396 ID=CX300396; Name=CX300396; organism=Citrus clementina; type=EST; length=570bpback to top |