CX300414
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACST (50S ribosomal protein L18 OS=Bacillus stearothermophilus GN=rplR PE=1 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 2.808e-18 Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 2 Query: 185 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 R RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK T+ SAST+ K E S IE +KKVGE++AK Sbjct: 11 RKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDK----EFGLDSTNNIEAAKKVGELVAK 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_DICTD (50S ribosomal protein L18 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplR PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18 Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 2 Query: 167 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 R+++E R RH RIRKKI GTPERPRL V++S +++Y Q+IDDTK HTL +AS+++K + +L S IE +K VGE+IAK Sbjct: 5 RSRKELRRIRHLRIRKKITGTPERPRLAVYKSLRYIYAQIIDDTKGHTLVAASSLEKELRSQL--KSTKNIEAAKLVGEVIAK 85
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_AQUAE (50S ribosomal protein L18 OS=Aquifex aeolicus GN=rplR PE=3 SV=1) HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18 Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 2 Query: 161 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 R +T+RE R RH RIRKK+ GTPERPRLCV+RS KH Y Q+IDDT HTL SAST+ G +I+ ++ V E+IA+ Sbjct: 3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLKHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIAR 87
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1) HSP 1 Score: 89.3521 bits (220), Expect = 6.257e-18 Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 2 Query: 185 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 R RH+R+RKKI GT ERPRL VFRSNKH+Y Q+IDD K T+ SAST+ K E D S IE +KKVGE++AK Sbjct: 11 RKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDK----EFDLESTGNIEAAKKVGELVAK 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_CYAA5 (50S ribosomal protein L18 OS=Cyanothece sp. (strain ATCC 51142) GN=rplR PE=3 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.067e-17 Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 T++E RH RIR+K+ GTP+ PRL VFRSN H+Y Q+IDD HTLA+AST++ + + L SSG T E S VG+++A+ Sbjct: 4 TRKESLKRRHRRIRRKVSGTPDCPRLAVFRSNHHIYAQIIDDVAQHTLAAASTLEPDLRNSL--SSGATCEASAAVGKLVAE 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_DICT6 (50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17 Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 2 Query: 167 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 R+++E R RH RIRKKI GT ERPRL V++S +++Y Q+IDDTK HTL SAS+++K I +L S IE +K VGE+IAK Sbjct: 5 RSRKELRKIRHLRIRKKIIGTSERPRLAVYKSLRYIYAQIIDDTKGHTLVSASSLEKEIRSQL--KSTKNIEAAKLVGEVIAK 85
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_AQUPY (50S ribosomal protein L18 OS=Aquifex pyrophilus GN=rplR PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17 Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 2 Query: 161 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 R +T+RE R RH RIRKK+ GTPERPRLCV+RS H Y Q+IDDT HTL SAST+ G +I+ ++ V E+IA+ Sbjct: 3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLNHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIAR 87
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_ACAM1 (50S ribosomal protein L18 OS=Acaryochloris marina (strain MBIC 11017) GN=rplR PE=3 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17 Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 2 Query: 170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 T+R+ +RH R+R+K+ GT ERPRL VFRSN+H+Y QVIDD + HTLA+AST + +L SSG T + S VG+++A+ Sbjct: 4 TRRDATRSRHQRVRRKVVGTAERPRLAVFRSNQHIYAQVIDDAQQHTLAAAST----VESDLKSSSGATCDASTAVGKLVAE 81
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1) HSP 1 Score: 87.8113 bits (216), Expect = 1.820e-17 Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 2 Query: 185 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 R RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDD K T+ SAST+ K E S I+ +KKVGE++AK Sbjct: 11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDK----EFSLDSTNNIDAAKKVGELVAK 83
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_SYNP2 (50S ribosomal protein L18 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplR PE=3 SV=1) HSP 1 Score: 87.4261 bits (215), Expect = 2.377e-17 Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 2 Query: 170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415 T+++ RH RIR++++GT +RPRL VFRS+KH+Y QVIDD K HTL +AST+ K + EL +SG I S VG +IAK Sbjct: 4 TRKQLTQRRHFRIRRRVEGTGDRPRLAVFRSHKHIYAQVIDDEKQHTLVAASTLDKDLKGEL--ASGGNISASTAVGNLIAK 83 The following BLAST results are available for this feature:
BLAST of CX300414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 281
Pagesback to topProperties
Sequences
The
following sequences are available for this feature:
EST sequence >CX300414 ID=CX300414; Name=CX300414; organism=Citrus clementina; type=EST; length=421bpback to top |