CX300414

Overview
NameCX300414
Unique NameCX300414
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length421
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_BACST (50S ribosomal protein L18 OS=Bacillus stearothermophilus GN=rplR PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.808e-18
Identity = 47/77 (61.04%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  185 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            R  RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDDTK  T+ SAST+ K    E    S   IE +KKVGE++AK
Sbjct:   11 RKKRHARIRKKIFGTTERPRLSVFRSNKHIYAQIIDDTKSATIVSASTLDK----EFGLDSTNNIEAAKKVGELVAK 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_DICTD (50S ribosomal protein L18 OS=Dictyoglomus turgidum (strain Z-1310 / DSM 6724) GN=rplR PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18
Identity = 45/83 (54.22%), Postives = 62/83 (74.70%), Query Frame = 2
Query:  167 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            R+++E R  RH RIRKKI GTPERPRL V++S +++Y Q+IDDTK HTL +AS+++K +  +L   S   IE +K VGE+IAK
Sbjct:    5 RSRKELRRIRHLRIRKKITGTPERPRLAVYKSLRYIYAQIIDDTKGHTLVAASSLEKELRSQL--KSTKNIEAAKLVGEVIAK 85          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_AQUAE (50S ribosomal protein L18 OS=Aquifex aeolicus GN=rplR PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18
Identity = 45/85 (52.94%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  161 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            R +T+RE R  RH RIRKK+ GTPERPRLCV+RS KH Y Q+IDDT  HTL SAST+            G +I+ ++ V E+IA+
Sbjct:    3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLKHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIAR 87          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_GEOSW (50S ribosomal protein L18 OS=Geobacillus sp. (strain WCH70) GN=rplR PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.257e-18
Identity = 46/77 (59.74%), Postives = 55/77 (71.43%), Query Frame = 2
Query:  185 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            R  RH+R+RKKI GT ERPRL VFRSNKH+Y Q+IDD K  T+ SAST+ K    E D  S   IE +KKVGE++AK
Sbjct:   11 RKKRHARVRKKIFGTAERPRLNVFRSNKHIYAQIIDDMKAVTIVSASTLDK----EFDLESTGNIEAAKKVGELVAK 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_CYAA5 (50S ribosomal protein L18 OS=Cyanothece sp. (strain ATCC 51142) GN=rplR PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.067e-17
Identity = 42/82 (51.22%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            T++E    RH RIR+K+ GTP+ PRL VFRSN H+Y Q+IDD   HTLA+AST++  + + L  SSG T E S  VG+++A+
Sbjct:    4 TRKESLKRRHRRIRRKVSGTPDCPRLAVFRSNHHIYAQIIDDVAQHTLAAASTLEPDLRNSL--SSGATCEASAAVGKLVAE 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_DICT6 (50S ribosomal protein L18 OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=rplR PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 46/83 (55.42%), Postives = 61/83 (73.49%), Query Frame = 2
Query:  167 RTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            R+++E R  RH RIRKKI GT ERPRL V++S +++Y Q+IDDTK HTL SAS+++K I  +L   S   IE +K VGE+IAK
Sbjct:    5 RSRKELRKIRHLRIRKKIIGTSERPRLAVYKSLRYIYAQIIDDTKGHTLVSASSLEKEIRSQL--KSTKNIEAAKLVGEVIAK 85          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_AQUPY (50S ribosomal protein L18 OS=Aquifex pyrophilus GN=rplR PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 44/85 (51.76%), Postives = 56/85 (65.88%), Query Frame = 2
Query:  161 RPRTKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            R +T+RE R  RH RIRKK+ GTPERPRLCV+RS  H Y Q+IDDT  HTL SAST+            G +I+ ++ V E+IA+
Sbjct:    3 RLKTRREKRLRRHKRIRKKVFGTPERPRLCVYRSLNHFYAQIIDDTIGHTLVSASTLDPEFEKITGKRGGKSIKDAEVVAEIIAR 87          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_ACAM1 (50S ribosomal protein L18 OS=Acaryochloris marina (strain MBIC 11017) GN=rplR PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 42/82 (51.22%), Postives = 59/82 (71.95%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            T+R+   +RH R+R+K+ GT ERPRL VFRSN+H+Y QVIDD + HTLA+AST    +  +L  SSG T + S  VG+++A+
Sbjct:    4 TRRDATRSRHQRVRRKVVGTAERPRLAVFRSNQHIYAQVIDDAQQHTLAAAST----VESDLKSSSGATCDASTAVGKLVAE 81          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_GEOTN (50S ribosomal protein L18 OS=Geobacillus thermodenitrificans (strain NG80-2) GN=rplR PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.820e-17
Identity = 45/77 (58.44%), Postives = 54/77 (70.13%), Query Frame = 2
Query:  185 RTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            R  RH+RIRKKI GT ERPRL VFRSNKH+Y Q+IDD K  T+ SAST+ K    E    S   I+ +KKVGE++AK
Sbjct:   11 RKKRHARIRKKIFGTAERPRLSVFRSNKHIYAQIIDDVKSATIVSASTLDK----EFSLDSTNNIDAAKKVGELVAK 83          
BLAST of CX300414 vs. ExPASy Swiss-Prot
Match: RL18_SYNP2 (50S ribosomal protein L18 OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=rplR PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 2.377e-17
Identity = 43/82 (52.44%), Postives = 58/82 (70.73%), Query Frame = 2
Query:  170 TKREDRTARHSRIRKKIDGTPERPRLCVFRSNKHLYVQVIDDTKMHTLASASTMQKPISDELDYSSGPTIEVSKKVGEMIAK 415
            T+++    RH RIR++++GT +RPRL VFRS+KH+Y QVIDD K HTL +AST+ K +  EL  +SG  I  S  VG +IAK
Sbjct:    4 TRKQLTQRRHFRIRRRVEGTGDRPRLAVFRSHKHIYAQVIDDEKQHTLVAASTLDKDLKGEL--ASGGNISASTAVGNLIAK 83          
The following BLAST results are available for this feature:
BLAST of CX300414 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 281
Match NameE-valueIdentityDescription
RL18_BACST2.808e-1861.0450S ribosomal protein L18 OS=Bacillus stearothermo... [more]
RL18_DICTD3.668e-1854.2250S ribosomal protein L18 OS=Dictyoglomus turgidum... [more]
RL18_AQUAE3.668e-1852.9450S ribosomal protein L18 OS=Aquifex aeolicus GN=r... [more]
RL18_GEOSW6.257e-1859.7450S ribosomal protein L18 OS=Geobacillus sp. (stra... [more]
RL18_CYAA51.067e-1751.2250S ribosomal protein L18 OS=Cyanothece sp. (strai... [more]
RL18_DICT61.394e-1755.4250S ribosomal protein L18 OS=Dictyoglomus thermoph... [more]
RL18_AQUPY1.394e-1751.7650S ribosomal protein L18 OS=Aquifex pyrophilus GN... [more]
RL18_ACAM11.394e-1751.2250S ribosomal protein L18 OS=Acaryochloris marina ... [more]
RL18_GEOTN1.820e-1758.4450S ribosomal protein L18 OS=Geobacillus thermoden... [more]
RL18_SYNP22.377e-1752.4450S ribosomal protein L18 OS=Synechococcus sp. (st... [more]

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Properties
Property NameValue
Genbank descriptionC07010A03SK SaltLeaf1 Citrus clementina cDNA clone C07010A03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300414 ID=CX300414; Name=CX300414; organism=Citrus clementina; type=EST; length=421bp
AGGGAGGAAGGGAATGGCAGCCGGTGCGAGCTCAGTTTGGATGCTTAATC
AGAGTTCATTTCTAGGATCATGTCAGCAACTTTCGAGTGTTTCAAAATTA
GTGGCAAGCAGAAGGCCAAGGCCAGCACCGCCATCTCTTTTCATCGTCGA
AGCCTCGACCAGACCAAGAACCAAAAGAGAGGACCGCACTGCCCGCCATT
CTCGCATCAGAAAGAAGATTGATGGGACTCCTGAGAGGCCGAGGCTGTGT
GTTTTCCGCTCCAACAAGCATCTCTATGTCCAGGTGATTGATGATACTAA
GATGCACACACTTGCTTCAGCTTCGACGATGCAGAAGCCCATCTCTGACG
AGCTTGACTATAGTTCTGGTCCGACGATTGAAGTTTCAAAGAAGGTGGGT
GAAATGATTGCAAAGTCATGT
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