CX300422

Overview
NameCX300422
Unique NameCX300422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIX_PEA (Endochitinase OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.550e-19
Identity = 52/120 (43.33%), Postives = 66/120 (55.00%), Query Frame = 2
Query:  107 LVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            LV    FD  +K +    C G GFYT DAFI A  S+  FG T      K+E+AAF A  +HETT              +C++ E+N  + +C+   +PCA GK YYGRGPIQLT N NY
Sbjct:   83 LVPSSLFDQMLKYRNDGRCAGHGFYTYDAFIAAARSFNGFGTTGDDNTKKKELAAFLAQTSHETTGGWPTAPDGPYAWGYCFVSEQNTQEVYCSPKDWPCAPGKKYYGRGPIQLTHNYNY 202          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI2_TOBAC (Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 3.331e-19
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 2
Query:  107 LVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGR----TDTKREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            +++   FD  +K++    C+GKGFY+ +AFI A  S+P FG     T  KRE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY
Sbjct:   78 IISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNY 198          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI1_TOBAC (Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 3.331e-19
Identity = 50/121 (41.32%), Postives = 72/121 (59.50%), Query Frame = 2
Query:  107 LVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGR----TDTKREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            +++   FD  +K++    C+GKGFY+ +AFI A  S+P FG     T  KRE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY
Sbjct:   83 IISSSMFDQMLKHRNDNACQGKGFYSYNAFINAARSFPGFGTSGDTTARKREIAAFFAQTSHETTGGWATAPDGPYAWGYCWLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNY 203          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI1_THECC (Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 5.682e-19
Identity = 55/121 (45.45%), Postives = 65/121 (53.72%), Query Frame = 2
Query:  107 LVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD--------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            L+T E FD  + ++    C  +GFYT DAFI A  S+P F  T      KREVAAF A  +HETT               +CY  E N AD     P YPCA GK Y+GRGP+QLT N NY
Sbjct:   75 LITRERFDQMLLHRNDGGCPARGFYTYDAFIAAAKSFPAFATTGDDATRKREVAAFLAQTSHETTGGAGWAAPDGPYTWGYCYNRELNPADYCQWDPNYPCAPGKQYFGRGPMQLTWNYNY 195          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI1_HORVU (26 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=4)

HSP 1 Score: 92.8189 bits (229), Expect = 5.682e-19
Identity = 54/124 (43.55%), Postives = 73/124 (58.87%), Query Frame = 2
Query:   98 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRT---DT-KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            V+ +V+   FD  + ++    C+ KGFYT DAF+ A +++  FG T   DT KREVAAF A  +HETT              +C+ +E+     +CT S Q+PCA GK YYGRGPIQL+ N NY
Sbjct:   77 VSSIVSRALFDRMLLHRNDGACQAKGFYTYDAFVAAASAFRGFGTTGGTDTRKREVAAFLAQTSHETTGGWATAPDGAFAWGYCFKQERGATSNYCTPSAQWPCAPGKSYYGRGPIQLSHNYNY 200          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI2_GOSHI (Endochitinase 2 (Fragment) OS=Gossypium hirsutum PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 9.692e-19
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:   98 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD--------------FCYIEEKNKADPHCTS-PQYPCANGKFYYGRGPIQLTGNGNY 412
            +T+L++ E F+  + ++    C  +GFYT DAFI A  S+P F  T      KRE+AAF A  +HETT               +CY  E N    +C S P YPCA GK Y+GRGP+QL+ N NY
Sbjct:   52 LTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNY 176          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI1_GOSHI (Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.692e-19
Identity = 52/125 (41.60%), Postives = 69/125 (55.20%), Query Frame = 2
Query:   98 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD--------------FCYIEEKNKADPHCTS-PQYPCANGKFYYGRGPIQLTGNGNY 412
            +T+L++ E F+  + ++    C  +GFYT DAFI A  S+P F  T      KRE+AAF A  +HETT               +CY  E N    +C S P YPCA GK Y+GRGP+QL+ N NY
Sbjct:   74 LTNLISRETFNQMLLHRNDGACPARGFYTYDAFIAAARSFPAFATTGDQATRKREIAAFLAQTSHETTGGAGWAAPDGPYAWGYCYNRELNPPSSYCASDPNYPCAPGKQYFGRGPMQLSWNYNY 198          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI1_SOLTU (Endochitinase 1 (Fragment) OS=Solanum tuberosum GN=CHTB1 PE=2 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.810e-18
Identity = 52/134 (38.81%), Postives = 74/134 (55.22%), Query Frame = 2
Query:   71 PGNVVCQNSVTDLVTPEFFDGIKNQA-PATCEGKG-FYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            PG       +  +++   FD + N      C+GKG FY+ +AFI+A  S+P FG T      KRE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY
Sbjct:   59 PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNY 192          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI2_PEA (Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 6.282e-18
Identity = 48/124 (38.71%), Postives = 75/124 (60.48%), Query Frame = 2
Query:   95 SVTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEF---GRTDTK-REVAAFFAHVTHETTD-------------FCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            +++ L++ + F+  +K++    C+GK FYT DAF++A  ++P F   G T TK RE+AAF    +HETT              +C++ E+N +     S ++PCA+GK YYGRGPIQ++ N NY
Sbjct:   67 TLSSLISGDTFNNMLKHRNDNACQGKPFYTYDAFLSAAKAFPNFANKGDTATKKREIAAFLGQTSHETTGGWPTAPDGPYAWGYCFLREQNPSTYCQASSEFPCASGKQYYGRGPIQISWNYNY 190          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI2_SOLTU (Endochitinase 2 (Fragment) OS=Solanum tuberosum GN=CHTB2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.072e-17
Identity = 54/140 (38.57%), Postives = 76/140 (54.29%), Query Frame = 2
Query:   71 PGNVVCQ------NSVTDLVTPEFFDGIKNQA-PATCEGKG-FYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            PGN   Q        +  +++   FD + N      C+GKG FY+ +AFI+A  S+P FG T      KRE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY
Sbjct:   51 PGNCQSQCPGGSPGDLGGVISNSMFDQMLNHRNDNACQGKGNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLREQGSPGDYCTPSNQWPCAPGRKYFGRGPIQISHNYNY 190          
The following BLAST results are available for this feature:
BLAST of CX300422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHIX_PEA2.550e-1943.33Endochitinase OS=Pisum sativum PE=2 SV=1[more]
CHI2_TOBAC3.331e-1941.32Endochitinase B OS=Nicotiana tabacum GN=CHN50 PE=1... [more]
CHI1_TOBAC3.331e-1941.32Endochitinase A OS=Nicotiana tabacum GN=CHN48 PE=1... [more]
CHI1_THECC5.682e-1945.45Endochitinase 1 OS=Theobroma cacao GN=CHIA1 PE=2 S... [more]
CHI1_HORVU5.682e-1943.5526 kDa endochitinase 1 OS=Hordeum vulgare PE=2 SV=... [more]
CHI2_GOSHI9.692e-1941.60Endochitinase 2 (Fragment) OS=Gossypium hirsutum P... [more]
CHI1_GOSHI9.692e-1941.60Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1[more]
CHI1_SOLTU4.810e-1838.81Endochitinase 1 (Fragment) OS=Solanum tuberosum GN... [more]
CHI2_PEA6.282e-1838.71Endochitinase A2 OS=Pisum sativum GN=CHI2 PE=1 SV=... [more]
CHI2_SOLTU1.072e-1738.57Endochitinase 2 (Fragment) OS=Solanum tuberosum GN... [more]

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Properties
Property NameValue
Genbank descriptionC07010A11SK SaltLeaf1 Citrus clementina cDNA clone C07010A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300422 ID=CX300422; Name=CX300422; organism=Citrus clementina; type=EST; length=418bp
AAAACATTTCTCCAAAATGGCCCTGCTTAATGTTTTCCTGGGGTTATTTC
TACTTGCTTTAACCAATATTCCCGGAAACGTAGTGTGTCAAAACTCCGTT
ACCGATCTCGTGACGCCGGAATTTTTTGACGGGATTAAGAATCAGGCTCC
AGCAACTTGCGAAGGGAAAGGGTTCTATACAAGAGATGCATTTATTACTG
CTCTCAATTCGTATCCTGAATTTGGCAGAACTGATACTAAGCGTGAAGTT
GCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATTTTTGCTACAT
AGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCACAATACCCAT
GTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCAGCTCACCGGA
AATGGAAACTACATAGAG
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