CX300422

Overview
NameCX300422
Unique NameCX300422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.072e-17
Identity = 53/128 (41.41%), Postives = 69/128 (53.91%), Query Frame = 2
Query:   92 NSVTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNK---ADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            + V  +V+   FD  + ++  A C  K FYT DAF+ A N++P F  T      KREVAAF A  +HETT              +C+ EE N    +D    S Q+PCA GK YYGRGPIQ++ N NY
Sbjct:   77 SGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY 204          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.399e-17
Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 2
Query:  134 IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            +K++   +C+GK FY+ +AFI A  S+P FG +      KRE+AAFFA  +HETT              +C++ E+     +C  S Q+PCA G+ Y+GRGPIQ++ N NY
Sbjct:   92 LKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNY 202          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17
Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 2
Query:   92 NSVTDLVTPEFFDGIK-NQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            + V  +V  + F+ +  ++    C  +GFYT +AF+ A  ++P FG T      KREVAAF    +HETT              +C+ +E+N    +C  SP++PCA G+ YYGRGPIQL+ N NY
Sbjct:   87 DGVGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY 212          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 5.318e-17
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 2
Query:   71 PGNVVCQNSVTDLVTPEFFDGIKNQA-PATCEGKG-FYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            PG       +  +++   FD + N      C+GK  FY+ +AF+TA  S+P FG T      KRE+AAF A  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY
Sbjct:   63 PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNY 196          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 9.071e-17
Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 2
Query:   71 PGNVVCQNSVTDLVTPEFFDG-IKNQAPATCEGKG-FYTRDAFITALNSYPEFGRT-DT---KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            PG       +  +++   FD  +K++    C+GK  FY+ +AFI A  S+  FG T DT   KRE+AAFFA  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY
Sbjct:   69 PGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNY 202          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.185e-16
Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 2
Query:   71 PGNVVCQNSVTDLVTPEFFDGIKNQA-PATCEGKG-FYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            PG       +  +++   FD + N      C+GK  FY+ +AFI+A  S+P FG T      KRE+AAF A  +HETT              +C++ E+     +CT S Q+PCA G+ Y+GRGPIQ++ N NY
Sbjct:   59 PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNY 192          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 2
Query:   95 SVTDLVTPEFFDGIK-NQAPATCEGKGFYTRDAFITALNSYPEFGRT-DTK---REVAAFFAHVTHETTD-------------FCYIEEKNKADPHC-TSPQYPCANGKFYYGRGPIQLTGNGNY 412
            +++ L++   F+ I  ++    C  KGFYT +AFITA  ++  FG T DT    +E+AAF A  +HETT              +CY  E+     +C +S Q+PCA GK Y+GRGPIQ++ N NY
Sbjct:    4 NISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY 128          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16
Identity = 50/124 (40.32%), Postives = 67/124 (54.03%), Query Frame = 2
Query:   98 VTDLVTPEFFDGI-KNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            ++D++    FD + K +  A C   GFYT +AFI+A   +P+FG T      KRE+AAF    +HETT              +CY++E N   P+C  S  Y C  GK Y GRGPIQL+ N NY
Sbjct:   89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNY 211          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2)

HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16
Identity = 54/129 (41.86%), Postives = 70/129 (54.26%), Query Frame = 2
Query:   92 NSVTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEF----GRTDT-KREVAAFFAHVTHETTD-------------FCYIEEKNKA--DPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            + V  +V+   FD  + ++  A C    FYT DAF+ A +++P F    G  DT KREVAAF A  +HETT              +C+ EE   A    +C  S Q+PCA GK YYGRGPIQL+ N NY
Sbjct:   79 SGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY 207          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 5.880e-16
Identity = 51/122 (41.80%), Postives = 65/122 (53.28%), Query Frame = 2
Query:   98 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRT--DT--KREVAAFFAHVTHETT------------DFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            V  +VT + F+  +KN+    C  KGFYT DAFI A NS+P FG T  DT  K+E+AAFF   +HETT             +C++ E N+              G  +YGRGPIQLTG  NY
Sbjct:   19 VGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQM-------------GSGFYGRGPIQLTGQSNY 127          
The following BLAST results are available for this feature:
BLAST of CX300422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHI1_ORYSJ1.072e-1741.41Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIT_SOLTU1.399e-1740.54Endochitinase OS=Solanum tuberosum PE=2 SV=1[more]
CHI2_ORYSJ4.072e-1738.10Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIC_SOLLC5.318e-1737.31Basic 30 kDa endochitinase OS=Solanum lycopersicum... [more]
CHI4_SOLTU9.071e-1738.81Endochitinase 4 (Fragment) OS=Solanum tuberosum GN... [more]
CHI3_SOLTU1.185e-1637.31Endochitinase 3 (Fragment) OS=Solanum tuberosum GN... [more]
CHID_SOLLC1.547e-1639.20Basic endochitinase (Fragment) OS=Solanum lycopers... [more]
CHI6_POPTR1.547e-1640.32Acidic endochitinase WIN6 OS=Populus trichocarpa G... [more]
CHI12_ORYSJ3.447e-1641.86Chitinase 12 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHIB_SOLLC5.880e-1641.80Acidic 27 kDa endochitinase OS=Solanum lycopersicu... [more]

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Properties
Property NameValue
Genbank descriptionC07010A11SK SaltLeaf1 Citrus clementina cDNA clone C07010A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300422 ID=CX300422; Name=CX300422; organism=Citrus clementina; type=EST; length=418bp
AAAACATTTCTCCAAAATGGCCCTGCTTAATGTTTTCCTGGGGTTATTTC
TACTTGCTTTAACCAATATTCCCGGAAACGTAGTGTGTCAAAACTCCGTT
ACCGATCTCGTGACGCCGGAATTTTTTGACGGGATTAAGAATCAGGCTCC
AGCAACTTGCGAAGGGAAAGGGTTCTATACAAGAGATGCATTTATTACTG
CTCTCAATTCGTATCCTGAATTTGGCAGAACTGATACTAAGCGTGAAGTT
GCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATTTTTGCTACAT
AGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCACAATACCCAT
GTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCAGCTCACCGGA
AATGGAAACTACATAGAG
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