CX300422
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI1_ORYSJ (Chitinase 1 OS=Oryza sativa subsp. japonica GN=Cht1 PE=2 SV=1) HSP 1 Score: 88.5817 bits (218), Expect = 1.072e-17 Identity = 53/128 (41.41%), Postives = 69/128 (53.91%), Query Frame = 2 Query: 92 NSVTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNK---ADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412 + V +V+ FD + ++ A C K FYT DAF+ A N++P F T KREVAAF A +HETT +C+ EE N +D S Q+PCA GK YYGRGPIQ++ N NY Sbjct: 77 SGVASIVSRSLFDQMLLHRNDAACPAKNFYTYDAFVAAANAFPSFATTGDAATRKREVAAFLAQTSHETTGGWATAPDGPYSWGYCFKEENNGNVGSDYCVQSSQWPCAAGKKYYGRGPIQISYNYNY 204
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIT_SOLTU (Endochitinase OS=Solanum tuberosum PE=2 SV=1) HSP 1 Score: 88.1965 bits (217), Expect = 1.399e-17 Identity = 45/111 (40.54%), Postives = 66/111 (59.46%), Query Frame = 2 Query: 134 IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412 +K++ +C+GK FY+ +AFI A S+P FG + KRE+AAFFA +HETT +C++ E+ +C S Q+PCA G+ Y+GRGPIQ++ N NY Sbjct: 92 LKHRNENSCQGKNFYSYNAFINAARSFPGFGTSGDINARKREIAAFFAQTSHETTGGWASAPDGPYAWGYCFLRERGNPGDYCPPSSQWPCAPGRKYFGRGPIQISHNYNY 202
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI2_ORYSJ (Chitinase 2 OS=Oryza sativa subsp. japonica GN=Cht2 PE=1 SV=1) HSP 1 Score: 86.6557 bits (213), Expect = 4.072e-17 Identity = 48/126 (38.10%), Postives = 70/126 (55.56%), Query Frame = 2 Query: 92 NSVTDLVTPEFFDGIK-NQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412 + V +V + F+ + ++ C +GFYT +AF+ A ++P FG T KREVAAF +HETT +C+ +E+N +C SP++PCA G+ YYGRGPIQL+ N NY Sbjct: 87 DGVGSIVPRDLFERLLLHRNDGACPARGFYTYEAFLAAAAAFPAFGGTGNTETRKREVAAFLGQTSHETTGGWPTAPDGPFSWGYCFKQEQNPPSDYCQPSPEWPCAPGRKYYGRGPIQLSFNFNY 212
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIC_SOLLC (Basic 30 kDa endochitinase OS=Solanum lycopersicum GN=CHI9 PE=1 SV=1) HSP 1 Score: 86.2705 bits (212), Expect = 5.318e-17 Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 2 Query: 71 PGNVVCQNSVTDLVTPEFFDGIKNQA-PATCEGKG-FYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412 PG + +++ FD + N C+GK FY+ +AF+TA S+P FG T KRE+AAF A +HETT +C++ E+ +CT S Q+PCA G+ Y+GRGPIQ++ N NY Sbjct: 63 PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFVTAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNY 196
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI4_SOLTU (Endochitinase 4 (Fragment) OS=Solanum tuberosum GN=CHTB4 PE=2 SV=1) HSP 1 Score: 85.5001 bits (210), Expect = 9.071e-17 Identity = 52/134 (38.81%), Postives = 75/134 (55.97%), Query Frame = 2 Query: 71 PGNVVCQNSVTDLVTPEFFDG-IKNQAPATCEGKG-FYTRDAFITALNSYPEFGRT-DT---KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412 PG + +++ FD +K++ C+GK FY+ +AFI A S+ FG T DT KRE+AAFFA +HETT +C++ E+ +CT S Q+PCA G+ Y+GRGPIQ++ N NY Sbjct: 69 PGPGPSGGDIGSVISNSMFDQMLKHRNDNACQGKNNFYSYNAFINAARSFGGFGTTGDTTARKREIAAFFAQTSHETTGGWPTAPDGPYAWGYCFLREQGSPGDYCTPSGQWPCAPGRKYFGRGPIQISHNYNY 202
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI3_SOLTU (Endochitinase 3 (Fragment) OS=Solanum tuberosum GN=CHTB3 PE=2 SV=1) HSP 1 Score: 85.1149 bits (209), Expect = 1.185e-16 Identity = 50/134 (37.31%), Postives = 72/134 (53.73%), Query Frame = 2 Query: 71 PGNVVCQNSVTDLVTPEFFDGIKNQA-PATCEGKG-FYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412 PG + +++ FD + N C+GK FY+ +AFI+A S+P FG T KRE+AAF A +HETT +C++ E+ +CT S Q+PCA G+ Y+GRGPIQ++ N NY Sbjct: 59 PGGPGPSGDLGGVISNSMFDQMLNHRNDNACQGKNNFYSYNAFISAAGSFPGFGTTGDITARKREIAAFLAQTSHETTGGWPSAPDGPYAWGYCFLREQGSPGDYCTPSSQWPCAPGRKYFGRGPIQISHNYNY 192
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHID_SOLLC (Basic endochitinase (Fragment) OS=Solanum lycopersicum GN=CHI14 PE=2 SV=1) HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16 Identity = 49/125 (39.20%), Postives = 71/125 (56.80%), Query Frame = 2 Query: 95 SVTDLVTPEFFDGIK-NQAPATCEGKGFYTRDAFITALNSYPEFGRT-DTK---REVAAFFAHVTHETTD-------------FCYIEEKNKADPHC-TSPQYPCANGKFYYGRGPIQLTGNGNY 412 +++ L++ F+ I ++ C KGFYT +AFITA ++ FG T DT +E+AAF A +HETT +CY E+ +C +S Q+PCA GK Y+GRGPIQ++ N NY Sbjct: 4 NISSLISKNLFERILVHRNDRACGAKGFYTYEAFITATKTFAAFGTTGDTNTRNKEIAAFLAQTSHETTGGWATAPDGPYSWGYCYNREQGSPGDYCASSQQWPCAPGKKYFGRGPIQISYNYNY 128
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI6_POPTR (Acidic endochitinase WIN6 OS=Populus trichocarpa GN=WIN6 PE=2 SV=2) HSP 1 Score: 84.7297 bits (208), Expect = 1.547e-16 Identity = 50/124 (40.32%), Postives = 67/124 (54.03%), Query Frame = 2 Query: 98 VTDLVTPEFFDGI-KNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412 ++D++ FD + K + A C GFYT +AFI+A +P+FG T KRE+AAF +HETT +CY++E N P+C S Y C GK Y GRGPIQL+ N NY Sbjct: 89 LSDIIPKSKFDALLKFRNDARCPAAGFYTYNAFISAAKEFPDFGNTGDDLMRKREIAAFLGQTSHETTGGWPDAPCGPYAWGYCYLKEIN-CQPYCDPSSNYQCVAGKQYCGRGPIQLSWNYNY 211
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI12_ORYSJ (Chitinase 12 OS=Oryza sativa subsp. japonica GN=Cht12 PE=2 SV=2) HSP 1 Score: 83.5741 bits (205), Expect = 3.447e-16 Identity = 54/129 (41.86%), Postives = 70/129 (54.26%), Query Frame = 2 Query: 92 NSVTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEF----GRTDT-KREVAAFFAHVTHETTD-------------FCYIEEKNKA--DPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412 + V +V+ FD + ++ A C FYT DAF+ A +++P F G DT KREVAAF A +HETT +C+ EE A +C S Q+PCA GK YYGRGPIQL+ N NY Sbjct: 79 SGVASIVSRSLFDQMLLHRNDAACPASNFYTYDAFVAAASAFPGFAAAGGDADTNKREVAAFLAQTSHETTGGWATAPDGPYAWGYCFKEENGGAAGPDYCQQSAQWPCAAGKKYYGRGPIQLSYNFNY 207
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIB_SOLLC (Acidic 27 kDa endochitinase OS=Solanum lycopersicum GN=CHI17 PE=1 SV=1) HSP 1 Score: 82.8037 bits (203), Expect = 5.880e-16 Identity = 51/122 (41.80%), Postives = 65/122 (53.28%), Query Frame = 2 Query: 98 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRT--DT--KREVAAFFAHVTHETT------------DFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412 V +VT + F+ +KN+ C KGFYT DAFI A NS+P FG T DT K+E+AAFF +HETT +C++ E N+ G +YGRGPIQLTG NY Sbjct: 19 VGTIVTSDLFNEMLKNRNDDRCPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGSLSADGPFAGGYCFVREGNQM-------------GSGFYGRGPIQLTGQSNY 127 The following BLAST results are available for this feature:
BLAST of CX300422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 53
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300422 ID=CX300422; Name=CX300422; organism=Citrus clementina; type=EST; length=418bpback to top |