CX300422

Overview
NameCX300422
Unique NameCX300422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIT_PETHY (Acidic endochitinase OS=Petunia hybrida PE=2 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.679e-16
Identity = 52/123 (42.28%), Postives = 65/123 (52.85%), Query Frame = 2
Query:   95 SVTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRT--DT--KREVAAFFAHVTHETT------------DFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            +V  +VT + FD  +KN+  A C    FYT DAFI A NS+P FG T  DT  K+E+AAFF   +HETT             +C++ E N+              G  YYGRGPIQLTG  NY
Sbjct:   25 NVGSIVTSDLFDQMLKNRNDARCFAVRFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETTGGTLSPDGPYAGGYCFLREGNQM-------------GNGYYGRGPIQLTGQSNY 134          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI10_ORYSJ (Chitinase 10 OS=Oryza sativa subsp. japonica GN=Cht10 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.310e-15
Identity = 47/125 (37.60%), Postives = 66/125 (52.80%), Query Frame = 2
Query:   98 VTDLVTPEFFDGI-KNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHC--TSPQYPCANGKFYYGRGPIQLTGNGNY 412
            V+ +V+ + +  +  ++  A C  +GFYT  +F+ A   +P F  T      KREVAAF A ++HETT               CY EE N    +C  T  Q+PC  GK Y+GRGPIQ++ N NY
Sbjct:   49 VSSIVSEQLYASLFLHKDDAACPARGFYTYASFVRAATRFPRFAATGCADARKREVAAFLAQISHETTGGWATAPDGPYAWGLCYKEEINPQSSYCDATDKQWPCYPGKSYHGRGPIQISWNFNY 173          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI9_ORYSJ (Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht9 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.711e-15
Identity = 48/125 (38.40%), Postives = 68/125 (54.40%), Query Frame = 2
Query:   95 SVTDLVTPEFFDGIK-NQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETTD-------------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            +V  +V+ E F+ +  ++  A C  +GFYT DA +TA  ++P+F  T      KREVAAF    +HETT              +C+ EE      +C  S ++PCA  K Y+GRGPIQL+ N NY
Sbjct:   85 AVEAVVSKELFEQLLLHRNDAACPARGFYTYDALVTAAAAFPDFAATGDDEARKREVAAFLGQTSHETTGGWATAPDGPYSWGYCFKEEIGATASYCVPSAEWPCAPDKKYFGRGPIQLSYNYNY 209          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI8_ORYSJ (Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht8 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 2.234e-15
Identity = 51/123 (41.46%), Postives = 65/123 (52.85%), Query Frame = 2
Query:   98 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTD-----TKREVAAFFAHVTHETT------------DFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            V  ++T   F+  + N+  + C  +GFYT DAFI A NS+P FG +       +RE+AAFF   +HETT             +C+ EE NKA    TSP         YYGRGPIQLTG  NY
Sbjct:   32 VGSVITQAVFNSMLPNRDNSQCPARGFYTYDAFIAAANSFPAFGTSGGSAELIRRELAAFFGQTSHETTGGTRGSSDQFQWGYCFKEEINKA----TSPP--------YYGRGPIQLTGQSNY 142          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIQ_TOBAC (Acidic endochitinase Q OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.109e-14
Identity = 46/121 (38.02%), Postives = 64/121 (52.89%), Query Frame = 2
Query:   98 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRT--DT--KREVAAFFAHVTHETT-----------DFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            +  +VT + F+  +KN+    C   GFYT DAFI A NS+P FG T  DT  ++E+AAFF   +HETT            +C++ + +++D               YYGRGPIQLT   NY
Sbjct:   27 IGSIVTSDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTTGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDR--------------YYGRGPIQLTNRNNY 133          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIP_TOBAC (Acidic endochitinase P OS=Nicotiana tabacum PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 44/121 (36.36%), Postives = 62/121 (51.24%), Query Frame = 2
Query:   98 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGR----TDTKREVAAFFAHVTHETT-----------DFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            +  +VT + F+  +KN+    C   GFYT DAFI A NS+P FG     T  ++E+AAFF   +HETT            +C++ + +++D               YYGRGPIQLT   NY
Sbjct:   27 IGSIVTNDLFNEMLKNRNDGRCPANGFYTYDAFIAAANSFPGFGTSGDDTARRKEIAAFFGQTSHETTGGSLSAEPFTGGYCFVRQNDQSDR--------------YYGRGPIQLTNQNNY 133          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI8_POPTR (Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 3.226e-14
Identity = 48/115 (41.74%), Postives = 59/115 (51.30%), Query Frame = 2
Query:  134 IKNQAPATCEGKGFYTRDAFITALNSYPEFGRT---DT-KREVAAFFAHVTHETT-------------DFCYIEEKNKADPHC---TSPQYPCANGKFYYGRGPIQLTGNGNYIE 418
            + N+   +C GKGFYT DA+  A   YP FG T   DT KRE+AAFFA  + ET+              +C + E N    +C   T   YPC     YYGRGP+QL  N NY E
Sbjct:   76 LPNRNNDSCPGKGFYTYDAYFVATEFYPGFGMTGDDDTRKRELAAFFAQTSQETSGRSIIGEDAPFTWGYCLVNELNPNSDYCDPKTKSSYPCVAD--YYGRGPLQLRWNYNYGE 188          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSJ (Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 2
Query:   98 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRT---DT-KREVAAFFAHVTHETTD------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            V  +VT + F+  + ++  A C  +GFY   AF+ A  ++P F  T   DT KREVAAF A  +H T+       +CY E K      C  + ++PCA GK Y+ RGP+Q+  N NY
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY 213          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI7_ORYSI (Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.187e-14
Identity = 45/117 (38.46%), Postives = 64/117 (54.70%), Query Frame = 2
Query:   98 VTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRT---DT-KREVAAFFAHVTHETTD------FCYIEEKNKADPHCT-SPQYPCANGKFYYGRGPIQLTGNGNY 412
            V  +VT + F+  + ++  A C  +GFY   AF+ A  ++P F  T   DT KREVAAF A  +H T+       +CY E K      C  + ++PCA GK Y+ RGP+Q+  N NY
Sbjct:   97 VASVVTSDQFERMLPHRDDAACPARGFYAYRAFVAAAGAFPAFAATGDADTRKREVAAFLAQTSHATSGGPYSWGYCYKEVKGATSDFCVPNARWPCAPGKAYHARGPMQIAYNYNY 213          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIA_SOLCI (Acidic endochitinase pcht28 OS=Solanum chilense PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.659e-13
Identity = 46/116 (39.66%), Postives = 62/116 (53.45%), Query Frame = 2
Query:  107 LVTPEFFDGIKN-QAPATCEGKGFYTRDAFITALNSYPEFGRT--DT--KREVAAFFAHVTHETT---------DFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            +VT E F+ + + +    C  KGFYT DAFI A NS+P FG T  DT  K+E+AAFF   +HET           +C++ + +++D               YYGRGPIQLT   NY
Sbjct:   30 IVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTTGDDTARKKEIAAFFGQTSHETKGGSAGTFTGGYCFVRQIDQSDR--------------YYGRGPIQLTHQSNY 131          
The following BLAST results are available for this feature:
BLAST of CX300422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
CHIT_PETHY7.679e-1642.28Acidic endochitinase OS=Petunia hybrida PE=2 SV=1[more]
CHI10_ORYSJ1.310e-1537.60Chitinase 10 OS=Oryza sativa subsp. japonica GN=Ch... [more]
CHI9_ORYSJ1.711e-1538.40Chitinase 9 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI8_ORYSJ2.234e-1541.46Chitinase 8 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHIQ_TOBAC1.109e-1438.02Acidic endochitinase Q OS=Nicotiana tabacum PE=1 S... [more]
CHIP_TOBAC3.226e-1436.36Acidic endochitinase P OS=Nicotiana tabacum PE=1 S... [more]
CHI8_POPTR3.226e-1441.74Endochitinase WIN8 OS=Populus trichocarpa GN=WIN8 ... [more]
CHI7_ORYSJ7.187e-1438.46Chitinase 7 OS=Oryza sativa subsp. japonica GN=Cht... [more]
CHI7_ORYSI7.187e-1438.46Chitinase 7 OS=Oryza sativa subsp. indica GN=Cht7 ... [more]
CHIA_SOLCI4.659e-1339.66Acidic endochitinase pcht28 OS=Solanum chilense PE... [more]

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Properties
Property NameValue
Genbank descriptionC07010A11SK SaltLeaf1 Citrus clementina cDNA clone C07010A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300422 ID=CX300422; Name=CX300422; organism=Citrus clementina; type=EST; length=418bp
AAAACATTTCTCCAAAATGGCCCTGCTTAATGTTTTCCTGGGGTTATTTC
TACTTGCTTTAACCAATATTCCCGGAAACGTAGTGTGTCAAAACTCCGTT
ACCGATCTCGTGACGCCGGAATTTTTTGACGGGATTAAGAATCAGGCTCC
AGCAACTTGCGAAGGGAAAGGGTTCTATACAAGAGATGCATTTATTACTG
CTCTCAATTCGTATCCTGAATTTGGCAGAACTGATACTAAGCGTGAAGTT
GCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATTTTTGCTACAT
AGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCACAATACCCAT
GTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCAGCTCACCGGA
AATGGAAACTACATAGAG
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