CX300422

Overview
NameCX300422
Unique NameCX300422
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length418
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: AGI_URTDI (Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE=1 SV=3)

HSP 1 Score: 73.1738 bits (178), Expect = 4.659e-13
Identity = 48/136 (35.29%), Postives = 64/136 (47.06%), Query Frame = 2
Query:   68 IPGNVVCQNSVTDLVTPEFFDGIKNQAPATCEGKGFYTRDAFITALNSYPEFGR----TDTKREVAAFFAHVTHETTDFCYIEEKNKADPH-----------------CTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            + GN    +    +VT   FD + +     C  +GFY+  +F+ A  S+P FG        KREVAAF AH++  T+     E  +  +PH                 CTS  +PCA GK Y  RGPIQLT N NY
Sbjct:  120 LSGNSTANSIGNVVVTEPLFDQMFSHRK-DCPSQGFYSYHSFLVAAESFPAFGTIGDVATRKREVAAFLAHISQATSG----ERSDVENPHAWGLCHINTTTVTENDFCTSSDWPCAAGKKYSPRGPIQLTHNFNY 250          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHIA_SOLLC (Acidic 26 kDa endochitinase OS=Solanum lycopersicum GN=CHI3 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.947e-13
Identity = 44/116 (37.93%), Postives = 60/116 (51.72%), Query Frame = 2
Query:  107 LVTPEFFDGIKN-QAPATCEGKGFYTRDAFITALNSYPEFGR----TDTKREVAAFFAHVTHETT---------DFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            +VT E F+ + + +    C  KGFYT DAFI A NS+P FG     T  K+E+AAFF   +HET           +C++++  ++D               YYGRGPIQLT   NY
Sbjct:   30 IVTRELFEQMLSFRNNDACPAKGFYTYDAFIAAANSFPGFGTAGDDTARKKEIAAFFGQTSHETNGGSAGTFTGGYCFVKQIEQSDR--------------YYGRGPIQLTHQSNY 131          
BLAST of CX300422 vs. ExPASy Swiss-Prot
Match: CHI11_ORYSJ (Chitinase 11 OS=Oryza sativa subsp. japonica GN=Cht11 PE=2 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.438e-11
Identity = 44/126 (34.92%), Postives = 58/126 (46.03%), Query Frame = 2
Query:   89 QNSVTDLVTPEFFDG-IKNQAPATCEGKGFYTRDAFITALNSYPEFGRTDT----KREVAAFFAHVTHETT-------------DFCYIEEKNKADPHCTSPQYPCANGKFYYGRGPIQLTGNGNY 412
            Q  V  ++T   F+  + ++    C+G  FYT DAFI A   +P FG T      +RE+AAFF   +HETT              +C + E   +DP              YYGRGPIQLT   NY
Sbjct:   24 QAGVGSIITRAMFESMLSHRGDQGCQG-AFYTYDAFIKAAGDFPRFGTTGNDETRRRELAAFFGQTSHETTGGWATAPDGPFAWGYCRVNEITPSDPP-------------YYGRGPIQLTHKYNY 135          
The following BLAST results are available for this feature:
BLAST of CX300422 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 53
Match NameE-valueIdentityDescription
AGI_URTDI4.659e-1335.29Lectin/endochitinase 1 OS=Urtica dioica GN=UDA1 PE... [more]
CHIA_SOLLC7.947e-1337.93Acidic 26 kDa endochitinase OS=Solanum lycopersicu... [more]
CHI11_ORYSJ7.438e-1134.92Chitinase 11 OS=Oryza sativa subsp. japonica GN=Ch... [more]

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Properties
Property NameValue
Genbank descriptionC07010A11SK SaltLeaf1 Citrus clementina cDNA clone C07010A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300422 ID=CX300422; Name=CX300422; organism=Citrus clementina; type=EST; length=418bp
AAAACATTTCTCCAAAATGGCCCTGCTTAATGTTTTCCTGGGGTTATTTC
TACTTGCTTTAACCAATATTCCCGGAAACGTAGTGTGTCAAAACTCCGTT
ACCGATCTCGTGACGCCGGAATTTTTTGACGGGATTAAGAATCAGGCTCC
AGCAACTTGCGAAGGGAAAGGGTTCTATACAAGAGATGCATTTATTACTG
CTCTCAATTCGTATCCTGAATTTGGCAGAACTGATACTAAGCGTGAAGTT
GCAGCATTTTTTGCCCATGTCACTCATGAAACAACAGATTTTTGCTACAT
AGAAGAGAAGAATAAAGCAGATCCTCATTGTACATCTCCACAATACCCAT
GTGCCAATGGTAAATTCTACTACGGCCGGGGACCGATTCAGCTCACCGGA
AATGGAAACTACATAGAG
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