CX300423
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_THEAQ (Signal recognition particle protein OS=Thermus aquaticus GN=ffh PE=1 SV=3) HSP 1 Score: 82.4185 bits (202), Expect = 1.019e-15 Identity = 46/132 (34.85%), Postives = 80/132 (60.61%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 397 DV S EK + + +A + K++ DFLKQ + + R+G S ++G++PG+ P ++ EK++K +EA++ +MTPEER+ P +L S RRKR+A+ SG + Q+V++ + +M+ MK+L Sbjct: 296 DVASLAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1) HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15 Identity = 47/134 (35.07%), Postives = 79/134 (58.96%), Query Frame = 2 Query: 2 DVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 397 D+ +EK +E+ +QE EE +K + F+ D Q + +MG + +++ MIPG+G P + VR E+ L+ ++++MT EE E P+++ S R KR+A+ SG + ++V +L+AQ QMR KNL Sbjct: 298 DIQGLLEKIEELQKEQEFKEEDVEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPDEAVRVGEEKLRRYRIIMDSMTEEELENPDIINYS--RIKRIARGSGTSTREVRELLAQYNQMRKMFKNL 429
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 3.871e-15 Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 2 Query: 2 DVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 397 D+ +EK +E+ QQE EE +K + F+ D Q + +MG + +++ MIPGMG P VR E+ LK + ++++MT EE E PE++ S R KR+A+ SG + Q+V +L+ Q QM+ K++ Sbjct: 298 DIQGLLEKFEELQKQQEFREEDLEKFLKGKFNLKDMYAQLEAMQKMGPLKQILQMIPGMGYSLPDDAVRVGEERLKKFKVIMDSMTEEELEHPEIINYS--RIKRIARGSGTSIQEVRELLHQYNQMKKMFKSM 429
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 3.871e-15 Identity = 47/134 (35.07%), Postives = 77/134 (57.46%), Query Frame = 2 Query: 2 DVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 397 D+ +EK +E+ +QE EE +K + F+ D Q + +MG + +++ MIPG+G P VR E+ LK + ++++MT EE E PE++ S R KR+A+ SG T +V +L+ Q QM+ K+L Sbjct: 298 DIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIMDSMTEEELENPEIINYS--RIKRIARGSGATTAEVRELLNQYNQMKKMFKSL 429
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_METTH (Signal recognition 54 kDa protein OS=Methanobacterium thermoautotrophicum GN=srp54 PE=3 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 3.871e-15 Identity = 46/144 (31.94%), Postives = 78/144 (54.17%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 433 D+ S +EK +EV ++E AEE I+S F D Q + +MG + +V+ M+PG GK+ R E++++ ++++MT EE EKP+++ S +R R+A+ SG + V +L+ + MK L GG + L Sbjct: 295 DLRSLLEKVEEVSEEEIAEESLDAILSGKFTLRDMRVQFEMMGKMGPLQQVMSMLPGAGKLPKDASRMTEETIRKYLIIMDSMTEEELEKPDIIKHSRIR--RIARGSGTRNEDVKELLKYYRVTKKAMKGLGRRKMGGPMGQL 436
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_MYCGE (Signal recognition particle protein OS=Mycoplasma genitalium GN=ffh PE=3 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 5.056e-15 Identity = 39/142 (27.46%), Postives = 81/142 (57.04%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 427 DV+S VEKA++V ++D + K+ D D L + + +MGS+S +I M+P ++ E +++ + +I +MT EER P+L+ P R++R+ + SG+ ++++L+ + +M+++ + +++ GS P Sbjct: 297 DVMSLVEKAEQVFDKKDLTKTISKMFLGKMDLEDLLIYMQQMHKMGSVSSLIKMLPANFSVSEENAELIENKIELWKVLINSMTREERRHPKLINRDPNRKQRIIKGSGRKMDELNKLMKEWNKMQLKATEMGKLLKTGSNP 438
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_METVS (Signal recognition 54 kDa protein OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54 PE=3 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 1.471e-14 Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 433 D+ S +EK ++VM E EE I+ F + Q T+++MG M +++GMIPG G P + + E+ LK + M+++MT EE+E PEL+ S R +R+A+ +G + ++ L+ + KN G ++ G +P + Sbjct: 298 DLDSLLEKTEDVMD-ESTEESIDSILKGKFTLVELYAQLETISKMGPMKQIMGMIPGFGGNMPKEAAQLTEQKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIAKGAGVKQDEIKDLL----KYYATTKNAFGNLKRGKMPKM 435
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_METM6 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 2.509e-14 Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 433 D+ S +EK +++M E AEE I+ F + Q T+++MG M +++ MIPGMG P + + E LK + M+++MT EE+E PEL+ S R +R+A+ +G +++ L+ + KN G ++ G +P + Sbjct: 298 DLDSLLEKTEDIMD-ESAEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIARGAGVKPEEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_METMP (Signal recognition 54 kDa protein OS=Methanococcus maripaludis GN=srp54 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14 Identity = 45/145 (31.03%), Postives = 80/145 (55.17%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 433 D+ S +EK +++M E EE I+ F + Q T+++MG M +++ MIPGMG P + + E LK + M+++MT EE+E PEL+ S R +R+A+ +G ++++ L+ + KN G ++ G +P + Sbjct: 298 DLDSLLEKTEDIMD-ESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIAKGAGVKQEEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_METM7 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14 Identity = 45/145 (31.03%), Postives = 80/145 (55.17%), Query Frame = 2 Query: 2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 433 D+ S +EK +++M E EE I+ F + Q T+++MG M +++ MIPGMG P + + E LK + M+++MT EE+E PEL+ S R +R+A+ +G ++++ L+ + KN G ++ G +P + Sbjct: 298 DLDSLLEKTEDIMD-ESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIKAS--RLQRIAKGAGVKQEEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435 The following BLAST results are available for this feature:
BLAST of CX300423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 54
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Sequences
The
following sequences are available for this feature:
EST sequence >CX300423 ID=CX300423; Name=CX300423; organism=Citrus clementina; type=EST; length=463bpback to top |