CX300423

Overview
NameCX300423
Unique NameCX300423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig828 contig Ccv1_Contig828:62..524. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_THEAQ (Signal recognition particle protein OS=Thermus aquaticus GN=ffh PE=1 SV=3)

HSP 1 Score: 82.4185 bits (202), Expect = 1.019e-15
Identity = 46/132 (34.85%), Postives = 80/132 (60.61%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 397
            DV S  EK +    + +A +  K++        DFLKQ + + R+G  S ++G++PG+    P  ++  EK++K +EA++ +MTPEER+ P +L  S  RRKR+A+ SG + Q+V++ +    +M+  MK+L
Sbjct:  296 DVASLAEKVRAAGLEAEAPKSAKEL-----SLEDFLKQMQNLKRLGPFSEILGLLPGV----PQGLKVDEKAIKRLEAIVLSMTPEERKDPRILNGS--RRKRIAKGSGTSVQEVNRFIKAFEEMKALMKSL 416          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_THEGJ (Signal recognition 54 kDa protein OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=srp54 PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.738e-15
Identity = 47/134 (35.07%), Postives = 79/134 (58.96%), Query Frame = 2
Query:    2 DVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 397
            D+   +EK +E+  +QE  EE  +K +   F+  D   Q   + +MG + +++ MIPG+G   P + VR  E+ L+    ++++MT EE E P+++  S  R KR+A+ SG + ++V +L+AQ  QMR   KNL
Sbjct:  298 DIQGLLEKIEELQKEQEFKEEDVEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPDEAVRVGEEKLRRYRIIMDSMTEEELENPDIINYS--RIKRIARGSGTSTREVRELLAQYNQMRKMFKNL 429          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_THEON (Signal recognition 54 kDa protein OS=Thermococcus onnurineus (strain NA1) GN=srp54 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.871e-15
Identity = 48/134 (35.82%), Postives = 78/134 (58.21%), Query Frame = 2
Query:    2 DVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 397
            D+   +EK +E+  QQE  EE  +K +   F+  D   Q   + +MG + +++ MIPGMG   P   VR  E+ LK  + ++++MT EE E PE++  S  R KR+A+ SG + Q+V +L+ Q  QM+   K++
Sbjct:  298 DIQGLLEKFEELQKQQEFREEDLEKFLKGKFNLKDMYAQLEAMQKMGPLKQILQMIPGMGYSLPDDAVRVGEERLKKFKVIMDSMTEEELEHPEIINYS--RIKRIARGSGTSIQEVRELLHQYNQMKKMFKSM 429          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_PYRKO (Signal recognition 54 kDa protein OS=Pyrococcus kodakaraensis GN=srp54 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.871e-15
Identity = 47/134 (35.07%), Postives = 77/134 (57.46%), Query Frame = 2
Query:    2 DVLSFVEKAQEVM-QQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQ-VREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNL 397
            D+   +EK +E+  +QE  EE  +K +   F+  D   Q   + +MG + +++ MIPG+G   P   VR  E+ LK  + ++++MT EE E PE++  S  R KR+A+ SG T  +V +L+ Q  QM+   K+L
Sbjct:  298 DIQGLLEKIEELQKEQEFREEDMEKFLRGKFNLKDMYAQLEAMQKMGPLKQILQMIPGLGYSLPEDAVRVGEEKLKRYKVIMDSMTEEELENPEIINYS--RIKRIARGSGATTAEVRELLNQYNQMKKMFKSL 429          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_METTH (Signal recognition 54 kDa protein OS=Methanobacterium thermoautotrophicum GN=srp54 PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 3.871e-15
Identity = 46/144 (31.94%), Postives = 78/144 (54.17%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 433
            D+ S +EK +EV ++E AEE    I+S  F   D   Q   + +MG + +V+ M+PG GK+     R  E++++    ++++MT EE EKP+++  S +R  R+A+ SG   + V +L+      +  MK L     GG +  L
Sbjct:  295 DLRSLLEKVEEVSEEEIAEESLDAILSGKFTLRDMRVQFEMMGKMGPLQQVMSMLPGAGKLPKDASRMTEETIRKYLIIMDSMTEEELEKPDIIKHSRIR--RIARGSGTRNEDVKELLKYYRVTKKAMKGLGRRKMGGPMGQL 436          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_MYCGE (Signal recognition particle protein OS=Mycoplasma genitalium GN=ffh PE=3 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 5.056e-15
Identity = 39/142 (27.46%), Postives = 81/142 (57.04%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVREAEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLP 427
            DV+S VEKA++V  ++D  +   K+     D  D L   + + +MGS+S +I M+P    ++       E  +++ + +I +MT EER  P+L+   P R++R+ + SG+   ++++L+ +  +M+++   +  +++ GS P
Sbjct:  297 DVMSLVEKAEQVFDKKDLTKTISKMFLGKMDLEDLLIYMQQMHKMGSVSSLIKMLPANFSVSEENAELIENKIELWKVLINSMTREERRHPKLINRDPNRKQRIIKGSGRKMDELNKLMKEWNKMQLKATEMGKLLKTGSNP 438          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_METVS (Signal recognition 54 kDa protein OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=srp54 PE=3 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.471e-14
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 433
            D+ S +EK ++VM  E  EE    I+   F   +   Q  T+++MG M +++GMIPG G   P +  +  E+ LK  + M+++MT EE+E PEL+  S  R +R+A+ +G  + ++  L+    +     KN  G ++ G +P +
Sbjct:  298 DLDSLLEKTEDVMD-ESTEESIDSILKGKFTLVELYAQLETISKMGPMKQIMGMIPGFGGNMPKEAAQLTEQKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIAKGAGVKQDEIKDLL----KYYATTKNAFGNLKRGKMPKM 435          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_METM6 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 2.509e-14
Identity = 46/145 (31.72%), Postives = 80/145 (55.17%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 433
            D+ S +EK +++M  E AEE    I+   F   +   Q  T+++MG M +++ MIPGMG   P +  +  E  LK  + M+++MT EE+E PEL+  S  R +R+A+ +G   +++  L+    +     KN  G ++ G +P +
Sbjct:  298 DLDSLLEKTEDIMD-ESAEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIARGAGVKPEEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_METMP (Signal recognition 54 kDa protein OS=Methanococcus maripaludis GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14
Identity = 45/145 (31.03%), Postives = 80/145 (55.17%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 433
            D+ S +EK +++M  E  EE    I+   F   +   Q  T+++MG M +++ MIPGMG   P +  +  E  LK  + M+++MT EE+E PEL+  S  R +R+A+ +G  ++++  L+    +     KN  G ++ G +P +
Sbjct:  298 DLDSLLEKTEDIMD-ESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNMPKEAAQLTEAKLKRYKIMMDSMTMEEKENPELIKTS--RLQRIAKGAGVKQEEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435          
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_METM7 (Signal recognition 54 kDa protein OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=srp54 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.277e-14
Identity = 45/145 (31.03%), Postives = 80/145 (55.17%), Query Frame = 2
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGKITPAQVRE-AEKSLKIMEAMIEAMTPEEREKPELLAESPVRRKRVAQDSGKTEQQVSQLVAQLFQMRVRMKNLMGVMEGGSLPAL 433
            D+ S +EK +++M  E  EE    I+   F   +   Q  T+++MG M +++ MIPGMG   P +  +  E  LK  + M+++MT EE+E PEL+  S  R +R+A+ +G  ++++  L+    +     KN  G ++ G +P +
Sbjct:  298 DLDSLLEKTEDIMD-ESTEESIDSILKGKFTLIELYAQLETISKMGPMKQILSMIPGMGGNLPKEAAQLTEDKLKRYKIMMDSMTMEEKENPELIKAS--RLQRIAKGAGVKQEEIKDLL----KYYSTTKNAFGNLKRGKMPKM 435          
The following BLAST results are available for this feature:
BLAST of CX300423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
SRP54_THEAQ1.019e-1534.85Signal recognition particle protein OS=Thermus aqu... [more]
SRP54_THEGJ1.738e-1535.07Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_THEON3.871e-1535.82Signal recognition 54 kDa protein OS=Thermococcus ... [more]
SRP54_PYRKO3.871e-1535.07Signal recognition 54 kDa protein OS=Pyrococcus ko... [more]
SRP54_METTH3.871e-1531.94Signal recognition 54 kDa protein OS=Methanobacter... [more]
SRP54_MYCGE5.056e-1527.46Signal recognition particle protein OS=Mycoplasma ... [more]
SRP54_METVS1.471e-1431.72Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METM62.509e-1431.72Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METMP3.277e-1431.03Signal recognition 54 kDa protein OS=Methanococcus... [more]
SRP54_METM73.277e-1431.03Signal recognition 54 kDa protein OS=Methanococcus... [more]

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Properties
Property NameValue
Genbank descriptionC07010A12SK SaltLeaf1 Citrus clementina cDNA clone C07010A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300423 ID=CX300423; Name=CX300423; organism=Citrus clementina; type=EST; length=463bp
AGATGTTCTCTCATTTGTAGAGAAGGCACAAGAAGTTATGCAACAAGAAG
ATGCTGAAGAAATGCAAAAGAAGATAATGAGTGCGAATTTTGACTTCAAT
GATTTCTTAAAGCAAACCCGTACTGTTGCACGTATGGGTTCGATGAGTCG
TGTTATAGGAATGATCCCTGGAATGGGGAAGATTACTCCTGCACAAGTTC
GAGAAGCAGAGAAGAGTTTAAAAATAATGGAAGCAATGATCGAAGCAATG
ACGCCTGAGGAAAGGGAGAAACCAGAACTGTTGGCTGAATCTCCTGTCAG
AAGAAAAAGAGTTGCTCAAGATTCTGGGAAAACAGAACAGCAGGTGAGCC
AACTTGTTGCTCAACTCTTCCAAATGCGTGTGCGTATGAAGAACTTAATG
GGTGTAATGGAAGGTGGTTCACTTCCTGCACTGAGCAATCTTGAGGATGC
CCTTAAATCTGAA
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