CX300423

Overview
NameCX300423
Unique NameCX300423
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length463
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_MACFA (Signal recognition particle 54 kDa protein OS=Macaca fascicularis GN=SRP54 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 39/149 (26.17%), Postives = 81/149 (54.36%), Query Frame = 2 
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGVMEGGSL 424
            D+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q     QM  +M  + G+ +GG +
Sbjct:  299 DIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM 446
[Close]
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_HUMAN (Signal recognition particle 54 kDa protein OS=Homo sapiens GN=SRP54 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 39/149 (26.17%), Postives = 81/149 (54.36%), Query Frame = 2 
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGVMEGGSL 424
            D+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q     QM  +M  + G+ +GG +
Sbjct:  299 DIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM 446
[Close]
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_CANFA (Signal recognition particle 54 kDa protein OS=Canis familiaris GN=SRP54 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 39/149 (26.17%), Postives = 81/149 (54.36%), Query Frame = 2 
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGVMEGGSL 424
            D+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q     QM  +M  + G+ +GG +
Sbjct:  299 DIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM 446
[Close]
BLAST of CX300423 vs. ExPASy Swiss-Prot
Match: SRP54_BOVIN (Signal recognition particle 54 kDa protein OS=Bos taurus GN=SRP54 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 7.555e-11
Identity = 39/149 (26.17%), Postives = 81/149 (54.36%), Query Frame = 2 
Query:    2 DVLSFVEKAQEVMQQEDAEEMQKKIMSANFDFNDFLKQTRTVARMGSMSRVIGMIPGMGK--ITPAQVREAEKSLKIMEAMIEAMTPEEREKPE---LLAESPVRRKRVAQDSGKTEQQVSQLVAQ---LFQMRVRMKNLMGVMEGGSL 424
            D+   ++K  E ++ +D E + +K+    F   D  +Q + + +MG  S+++GMIPG G   ++    +E+   LK +  ++++M  +E +  +   + ++ P R +RVA+ SG + + V +L+ Q     QM  +M  + G+ +GG +
Sbjct:  299 DIEGLIDKVNE-LKLDDNEALIEKLKHGQFTLRDMYEQFQNIMKMGPFSQILGMIPGFGTDFMSKGNEQESMARLKKLMTIMDSMNDQELDSTDGAKVFSKQPGRIQRVARGSGVSTRDVQELLTQYTKFAQMVKKMGGIKGLFKGGDM 446
The following BLAST results are available for this feature:
BLAST of CX300423 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
SRP54_MACFA7.555e-1126.17Signal recognition particle 54 kDa protein OS=Maca... [more]
SRP54_HUMAN7.555e-1126.17Signal recognition particle 54 kDa protein OS=Homo... [more]
SRP54_CANFA7.555e-1126.17Signal recognition particle 54 kDa protein OS=Cani... [more]
SRP54_BOVIN7.555e-1126.17Signal recognition particle 54 kDa protein OS=Bos ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07010A12SK SaltLeaf1 Citrus clementina cDNA clone C07010A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300423 ID=CX300423; Name=CX300423; organism=Citrus clementina; type=EST; length=463bp
AGATGTTCTCTCATTTGTAGAGAAGGCACAAGAAGTTATGCAACAAGAAG
ATGCTGAAGAAATGCAAAAGAAGATAATGAGTGCGAATTTTGACTTCAAT
GATTTCTTAAAGCAAACCCGTACTGTTGCACGTATGGGTTCGATGAGTCG
TGTTATAGGAATGATCCCTGGAATGGGGAAGATTACTCCTGCACAAGTTC
GAGAAGCAGAGAAGAGTTTAAAAATAATGGAAGCAATGATCGAAGCAATG
ACGCCTGAGGAAAGGGAGAAACCAGAACTGTTGGCTGAATCTCCTGTCAG
AAGAAAAAGAGTTGCTCAAGATTCTGGGAAAACAGAACAGCAGGTGAGCC
AACTTGTTGCTCAACTCTTCCAAATGCGTGTGCGTATGAAGAACTTAATG
GGTGTAATGGAAGGTGGTTCACTTCCTGCACTGAGCAATCTTGAGGATGC
CCTTAAATCTGAA
back to top