CX300434

Overview
NameCX300434
Unique NameCX300434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length292
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig108 contig Ccv1_Contig108:1063..1354. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB2A_SOLLC (Chlorophyll a-b binding protein 1A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB1A PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.335e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 265
[Close]
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB24_PETSP (Chlorophyll a-b binding protein 25, chloroplastic OS=Petunia sp. GN=CAB25 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.335e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  216 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB23_APIGR (Chlorophyll a-b binding protein, chloroplastic OS=Apium graveolens GN=LHC0 PE=1 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.335e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  214 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB22_HORVU (Chlorophyll a-b binding protein 2, chloroplastic OS=Hordeum vulgare GN=CAB2 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.335e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  214 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 264
[Close]
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_SOYBN (Chlorophyll a-b binding protein, chloroplastic (Fragment) OS=Glycine max PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.335e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA+PVNNNAWAYATNFVPGK
Sbjct:  195 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAEPVNNNAWAYATNFVPGK 245
[Close]
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_SINAL (Chlorophyll a-b binding protein 1, chloroplastic OS=Sinapis alba GN=CAB1 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.335e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  216 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_RAPSA (Chlorophyll a-b binding of LHCII type 1 protein (Fragment) OS=Raphanus sativus PE=2 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.335e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:   74 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 124
[Close]
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_PETSP (Chlorophyll a-b binding protein 13, chloroplastic OS=Petunia sp. GN=CAB13 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 1.335e-23
Identity = 50/51 (98.04%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  216 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAFATNFVPGK 266
[Close]
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB25_NICPL (Chlorophyll a-b binding protein E, chloroplastic OS=Nicotiana plumbaginifolia GN=CABE PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 1.743e-23
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQA+VTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  216 KNGRLAMFSMFGFFVQALVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 266
[Close]
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB48_MAIZE (Chlorophyll a-b binding protein 48, chloroplastic OS=Zea mays GN=CAB48 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.277e-23
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHL DPVNNNAWAYATNFVPGK
Sbjct:  214 KNGRLAMFSMFGFFVQAIVTGKGPIENLADHLTDPVNNNAWAYATNFVPGK 264
The following BLAST results are available for this feature:
BLAST of CX300434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB2A_SOLLC1.335e-2398.04Chlorophyll a-b binding protein 1A, chloroplastic ... [more]
CB24_PETSP1.335e-2398.04Chlorophyll a-b binding protein 25, chloroplastic ... [more]
CB23_APIGR1.335e-2398.04Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB22_HORVU1.335e-2398.04Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_SOYBN1.335e-2398.04Chlorophyll a-b binding protein, chloroplastic (Fr... [more]
CB21_SINAL1.335e-2398.04Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_RAPSA1.335e-2398.04Chlorophyll a-b binding of LHCII type 1 protein (F... [more]
CB21_PETSP1.335e-2398.04Chlorophyll a-b binding protein 13, chloroplastic ... [more]
CB25_NICPL1.743e-2396.08Chlorophyll a-b binding protein E, chloroplastic O... [more]
CB48_MAIZE2.277e-2396.08Chlorophyll a-b binding protein 48, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC07010B12SK SaltLeaf1 Citrus clementina cDNA clone C07010B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300434 ID=CX300434; Name=CX300434; organism=Citrus clementina; type=EST; length=292bp
AAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGC
CATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTG
ACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGA
AAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATAT
CATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTA
TTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAA
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