CX300434

Overview
NameCX300434
Unique NameCX300434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length292
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB2F_SOLLC (Chlorophyll a-b binding protein 3B, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3B PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.277e-23
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB2E_SOLLC (Chlorophyll a-b binding protein 3A, chloroplastic (Fragments) OS=Solanum lycopersicum GN=CAB3A PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.277e-23
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWA+ATNFVPGK
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAFATNFVPGK 267          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB28_PEA (Chlorophyll a-b binding protein 8, chloroplastic OS=Pisum sativum GN=CAB8 PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.277e-23
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHL+DPVNNNAW+YATNFVPGK
Sbjct:  218 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLSDPVNNNAWSYATNFVPGK 268          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB22_ARATH (Chlorophyll a-b binding protein 2, chloroplastic OS=Arabidopsis thaliana GN=CAB2A PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.277e-23
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_ARATH (Chlorophyll a-b binding protein 165/180, chloroplastic OS=Arabidopsis thaliana GN=LHCP-A PE=1 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 2.277e-23
Identity = 49/51 (96.08%), Postives = 51/51 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENLADHLADPVNNNAWA+ATNFVPGK
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAFATNFVPGK 267          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB27_TOBAC (Chlorophyll a-b binding protein 7, chloroplastic OS=Nicotiana tabacum GN=CAB7 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPL+NL DHLADPVNNNAWAYATNFVPGK
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPLDNLVDHLADPVNNNAWAYATNFVPGK 267          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB23_SOYBN (Chlorophyll a-b binding protein 3, chloroplastic OS=Glycine max GN=CAB3 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 50/51 (98.04%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLA PVNNNAWAYATNFVPGK
Sbjct:  213 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLAGPVNNNAWAYATNFVPGK 263          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_MAIZE (Chlorophyll a-b binding protein 1, chloroplastic OS=Zea mays GN=CAB1 PE=3 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 2.974e-23
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPG 150
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPG
Sbjct:  212 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPG 261          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_PEA (Chlorophyll a-b binding protein AB96 (Fragment) OS=Pisum sativum GN=AB96 PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 5.073e-23
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFV AIVTGKGPLENLADHLADPVNNNAW+YATNFVPGK
Sbjct:  178 KNGRLAMFSMFGFFVPAIVTGKGPLENLADHLADPVNNNAWSYATNFVPGK 228          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB2A_SPIOL (Chlorophyll a-b binding protein, chloroplastic OS=Spinacia oleracea PE=1 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 6.625e-23
Identity = 49/51 (96.08%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAW +ATNFVPGK
Sbjct:  217 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWNFATNFVPGK 267          
The following BLAST results are available for this feature:
BLAST of CX300434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB2F_SOLLC2.277e-2396.08Chlorophyll a-b binding protein 3B, chloroplastic ... [more]
CB2E_SOLLC2.277e-2396.08Chlorophyll a-b binding protein 3A, chloroplastic ... [more]
CB28_PEA2.277e-2396.08Chlorophyll a-b binding protein 8, chloroplastic O... [more]
CB22_ARATH2.277e-2396.08Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB21_ARATH2.277e-2396.08Chlorophyll a-b binding protein 165/180, chloropla... [more]
CB27_TOBAC2.974e-2396.08Chlorophyll a-b binding protein 7, chloroplastic O... [more]
CB23_SOYBN2.974e-2398.04Chlorophyll a-b binding protein 3, chloroplastic O... [more]
CB21_MAIZE2.974e-2398.00Chlorophyll a-b binding protein 1, chloroplastic O... [more]
CB21_PEA5.073e-2396.08Chlorophyll a-b binding protein AB96 (Fragment) OS... [more]
CB2A_SPIOL6.625e-2396.08Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07010B12SK SaltLeaf1 Citrus clementina cDNA clone C07010B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300434 ID=CX300434; Name=CX300434; organism=Citrus clementina; type=EST; length=292bp
AAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGC
CATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTG
ACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGA
AAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATAT
CATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTA
TTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAA
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