CX300434

Overview
NameCX300434
Unique NameCX300434
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length292
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB22_MAIZE (Chlorophyll a-b binding protein, chloroplastic OS=Zea mays PE=2 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 1.928e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            K GRLAM SMFGFFVQAIVTGKGPLENLADH+ADPVNNNAWAYATNFVPGK
Sbjct:  215 KKGRLAMLSMFGFFVQAIVTGKGPLENLADHIADPVNNNAWAYATNFVPGK 265          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB25_SOLLC (Chlorophyll a-b binding protein 5, chloroplastic (Fragment) OS=Solanum lycopersicum GN=CAB5 PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 2.517e-22
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENL+DH+ADPV NNAWAYATNFVPGK
Sbjct:  187 KNGRLAMFSMFGFFVQAIVTGKGPIENLSDHIADPVANNAWAYATNFVPGK 237          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB22_PINSY (Chlorophyll a-b binding protein type 2 member 2 (Fragment) OS=Pinus sylvestris PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.288e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  100 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 150          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB22_PETSP (Chlorophyll a-b binding protein 22L, chloroplastic OS=Petunia sp. GN=CAB22L PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.288e-22
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFF+QAIVTGKGPLENLADHL DPVNNNAW+YATNFVP K
Sbjct:  217 KNGRLAMFSMFGFFIQAIVTGKGPLENLADHLVDPVNNNAWSYATNFVPRK 267          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_PINTH (Chlorophyll a-b binding protein type I, chloroplastic OS=Pinus thunbergii PE=2 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.288e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  216 KNGRLAMFSMFGFFVQAIVTGKGPIENLYDHLADPVANNAWAYATNFVPGK 266          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_LEMGI (Chlorophyll a-b binding protein of LHCII type I, chloroplastic OS=Lemna gibba PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 3.288e-22
Identity = 47/51 (92.16%), Postives = 50/51 (98.04%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENLADH+ADPV NNAWA+ATNFVPGK
Sbjct:  214 KNGRLAMFSMFGFFVQAIVTGKGPIENLADHIADPVANNAWAFATNFVPGK 264          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB21_GOSHI (Chlorophyll a-b binding protein 151, chloroplastic OS=Gossypium hirsutum GN=CAB-151 PE=2 SV=2)

HSP 1 Score: 103.605 bits (257), Expect = 3.288e-22
Identity = 48/51 (94.12%), Postives = 49/51 (96.08%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENL DHLADPV NNAWAYATNFVPGK
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPIENLFDHLADPVANNAWAYATNFVPGK 265          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB22_SOYBN (Chlorophyll a-b binding protein 2, chloroplastic OS=Glycine max GN=CAB2 PE=3 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 4.294e-22
Identity = 48/51 (94.12%), Postives = 48/51 (94.12%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYAT   PGK
Sbjct:  206 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATKLCPGK 256          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB23_TOBAC (Chlorophyll a-b binding protein 36, chloroplastic OS=Nicotiana tabacum GN=CAB36 PE=3 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.325e-22
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  215 KNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 265          
BLAST of CX300434 vs. ExPASy Swiss-Prot
Match: CB23_ORYSJ (Chlorophyll a-b binding protein, chloroplastic OS=Oryza sativa subsp. japonica GN=RCABP89 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 7.325e-22
Identity = 47/51 (92.16%), Postives = 49/51 (96.08%), Query Frame = 1
Query:    1 KNGRLAMFSMFGFFVQAIVTGKGPLENLADHLADPVNNNAWAYATNFVPGK 153
            KNGRLAMFSMFGFFVQAIVTGKGP+ENL DH+ADPV NNAWAYATNFVPGK
Sbjct:  213 KNGRLAMFSMFGFFVQAIVTGKGPIENLFDHVADPVANNAWAYATNFVPGK 263          
The following BLAST results are available for this feature:
BLAST of CX300434 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
CB22_MAIZE1.928e-2294.12Chlorophyll a-b binding protein, chloroplastic OS=... [more]
CB25_SOLLC2.517e-2292.16Chlorophyll a-b binding protein 5, chloroplastic (... [more]
CB22_PINSY3.288e-2294.12Chlorophyll a-b binding protein type 2 member 2 (F... [more]
CB22_PETSP3.288e-2292.16Chlorophyll a-b binding protein 22L, chloroplastic... [more]
CB21_PINTH3.288e-2294.12Chlorophyll a-b binding protein type I, chloroplas... [more]
CB21_LEMGI3.288e-2292.16Chlorophyll a-b binding protein of LHCII type I, c... [more]
CB21_GOSHI3.288e-2294.12Chlorophyll a-b binding protein 151, chloroplastic... [more]
CB22_SOYBN4.294e-2294.12Chlorophyll a-b binding protein 2, chloroplastic O... [more]
CB23_TOBAC7.325e-2292.16Chlorophyll a-b binding protein 36, chloroplastic ... [more]
CB23_ORYSJ7.325e-2292.16Chlorophyll a-b binding protein, chloroplastic OS=... [more]

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Properties
Property NameValue
Genbank descriptionC07010B12SK SaltLeaf1 Citrus clementina cDNA clone C07010B12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300434 ID=CX300434; Name=CX300434; organism=Citrus clementina; type=EST; length=292bp
AAGAATGGAAGGTTGGCTATGTTCTCCATGTTTGGTTTCTTTGTTCAGGC
CATTGTCACCGGCAAGGGACCGTTAGAGAACTTGGCCGACCACTTGGCTG
ACCCTGTCAATAACAATGCCTGGGCCTACGCCACCAACTTTGTCCCCGGA
AAGTGAGCTTCGGTTGATAAGAGTTTTTCTCTTTTCGGTTTCTTGGATAT
CATGTAAATCTGTTGTGAGCTCATGGAAGCTTTAATTTGAGTTGTGATTA
TTTATAAAATGCTTCAATTTGATCTAAAAAAAAAAAAAAAAA
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