CX300438

Overview
NameCX300438
Unique NameCX300438
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length384
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX300438 vs. ExPASy Swiss-Prot
Match: CISD2_DROME (CDGSH iron sulfur domain-containing protein 2 homolog OS=Drosophila melanogaster GN=CG1458 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.275e-14
Identity = 33/61 (54.10%), Postives = 46/61 (75.41%), Query Frame = 2 
Query:   62 NLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKK 244
            N  IRK E KVVD + V ++++   A+CRCW++  +P CDGSH +HNK TGDNVGP+++KK
Sbjct:   74 NNHIRKNEPKVVDMIDVEDIAEK-AAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPIVIKK 133
[Close]
BLAST of CX300438 vs. ExPASy Swiss-Prot
Match: CISD2_DROPS (CDGSH iron sulfur domain-containing protein 2 homolog OS=Drosophila pseudoobscura pseudoobscura GN=GA13095 PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.619e-13
Identity = 33/62 (53.23%), Postives = 45/62 (72.58%), Query Frame = 2 
Query:   62 NLDIRKTEEKVVDSVVVTELSKPLTAYCRCWRSGTFPLCDGSHVKHNKATGDNVGPLLLKKQ 247
            N  IRK E KVV  V V +++    A+CRCW++  +P CDGSH +HNK TGDNVGP+++KK+
Sbjct:   72 NSSIRKNEAKVVTMVDVEDIAGQ-AAFCRCWKTKNWPYCDGSHGEHNKQTGDNVGPVVVKKK 132
The following BLAST results are available for this feature:
BLAST of CX300438 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
CISD2_DROME4.275e-1454.10CDGSH iron sulfur domain-containing protein 2 homo... [more]
CISD2_DROPS3.619e-1353.23CDGSH iron sulfur domain-containing protein 2 homo... [more]

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Properties
Property NameValue
Genbank descriptionC07010C04SK SaltLeaf1 Citrus clementina cDNA clone C07010C04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300438 ID=CX300438; Name=CX300438; organism=Citrus clementina; type=EST; length=384bp
GGGTGTAGTTACGGCGAGGCCGAGGCGCGTGGTGGTGGTGAGAGCGGAAG
GTCAGGGGATCAATTTGGATATCAGGAAGACGGAGGAGAAGGTTGTTGAC
TCTGTCGTGGTAACCGAGCTCTCCAAGCCCCTCACCGCGTATTGCAGATG
CTGGAGGTCAGGGACGTTCCCCCTGTGCGATGGAAGCCACGTAAAGCACA
ACAAAGCTACTGGGGATAATGTTGGGCCTTTGCTGTTGAAAAAGCAGTGA
TTATGTTATGTATTTTCATTTTCCCTTGGTGCCATTTGTTCCTGAACTTG
AGAACTGAAACACTTTTGAGAGTTGATTGCATGAATAATGAGTTTTCTGT
CATTAGTTGACCAAAACTTTGGTCGCAATAGAAT
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