CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH1_ARATH (Glycine cleavage system H protein 1, mitochondrial OS=Arabidopsis thaliana GN=GDCSH PE=1 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 1.213e-37
Identity = 80/114 (70.18%), Postives = 91/114 (79.82%), Query Frame = 1
Query:   37 MALRMWASSTANALRISCA---SKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            MALRMWASSTANAL++S +   S    F+ SRCFS+VL+GLKYA+SHEWVKHEGSVAT GIT HAQDHL EVVFVELPE   S  +   F  VESVKATS++ SPISGE+IEVN
Sbjct:    1 MALRMWASSTANALKLSSSVSKSHLSPFSFSRCFSTVLEGLKYANSHEWVKHEGSVATIGITAHAQDHLGEVVFVELPEDNTSVSKEKSFGAVESVKATSEILSPISGEIIEVN 114          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_RUBXD (Glycine cleavage system H protein OS=Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129) GN=gcvH PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 2.540e-19
Identity = 45/74 (60.81%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L Y  +HEW + EG  AT GITDHAQ+ L +VVFVELPE G+S + G  F  +ESVKA SD+ SP+SGEV EVN
Sbjct:    8 LVYTRTHEWARIEGDAATVGITDHAQEELGDVVFVELPEVGSSVQAGEPFGTIESVKAVSDLYSPVSGEVTEVN 81          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ALCBS (Glycine cleavage system H protein OS=Alcanivorax borkumensis (strain SK2 / ATCC 700651 / DSM 11573) GN=gcvH PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.333e-19
Identity = 44/74 (59.46%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+YASSHEW K E  VAT GI+DHAQD + ++V+VELPE G     G    VVESVKA SD+ SP+SGE++E+N
Sbjct:    8 LRYASSHEWAKVEDGVATVGISDHAQDAMGDLVYVELPEVGQVVAAGDETGVVESVKAASDIYSPVSGEIVEIN 81          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_AGRT5 (Glycine cleavage system H protein OS=Agrobacterium tumefaciens (strain C58 / ATCC 33970) GN=gcvH PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.654e-19
Identity = 42/74 (56.76%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+ + HEW+K EG +AT GIT HA + L ++VFVELPE GA+F + G    VESVKA SDV  P+ GEV+E+N
Sbjct:    2 LKFTAEHEWLKFEGDIATVGITSHAAEQLGDLVFVELPEVGATFAKDGDAATVESVKAASDVYCPLDGEVVEIN 75          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_RHIME (Glycine cleavage system H protein OS=Rhizobium meliloti GN=gcvH PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 1.261e-18
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+   HEW+K +G VAT GIT+HA   L ++VFVELPE GASF +G     VESVKA SDV  P+ GE++EVN
Sbjct:    2 LKFTEEHEWLKIDGDVATVGITEHAAGQLGDLVFVELPEAGASFSKGDSAATVESVKAASDVYCPLDGEIVEVN 75          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_RHISN (Glycine cleavage system H protein OS=Rhizobium sp. (strain NGR234) GN=gcvH PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 1.647e-18
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+   HEW+K EG VAT GIT+HA   L ++VFVELPE GA+F +G     VESVKA SDV  P+ GE++E+N
Sbjct:    2 LKFTEEHEWLKVEGGVATVGITEHAAGQLGDLVFVELPEAGATFSKGDSAATVESVKAASDVYCPLDGEIVEIN 75          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAAB (Glycine cleavage system H protein OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.151e-18
Identity = 44/79 (55.70%), Postives = 59/79 (74.68%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY++ HEWVK EG+VAT GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSNEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAAW (Glycine cleavage system H protein OS=Staphylococcus aureus (strain MW2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.809e-18
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VAT GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAAS (Glycine cleavage system H protein OS=Staphylococcus aureus (strain MSSA476) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.809e-18
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VAT GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAAR (Glycine cleavage system H protein OS=Staphylococcus aureus (strain MRSA252) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.809e-18
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VAT GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH1_ARATH1.213e-3770.18Glycine cleavage system H protein 1, mitochondrial... [more]
GCSH_RUBXD2.540e-1960.81Glycine cleavage system H protein OS=Rubrobacter x... [more]
GCSH_ALCBS4.333e-1959.46Glycine cleavage system H protein OS=Alcanivorax b... [more]
GCSH_AGRT59.654e-1956.76Glycine cleavage system H protein OS=Agrobacterium... [more]
GCSH_RHIME1.261e-1858.11Glycine cleavage system H protein OS=Rhizobium mel... [more]
GCSH_RHISN1.647e-1856.76Glycine cleavage system H protein OS=Rhizobium sp.... [more]
GCSH_STAAB2.151e-1855.70Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAW2.809e-1855.70Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAS2.809e-1855.70Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAR2.809e-1855.70Glycine cleavage system H protein OS=Staphylococcu... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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