CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHEFN (Glycine cleavage system H protein OS=Shewanella frigidimarina (strain NCIMB 400) GN=gcvH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 45/81 (55.56%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVA-TAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW++ E   + T GIT+HAQ+ L ++VFVELPE G +   G    V ESVKA SD+ +PISGEVI VN
Sbjct:    2 STIPADLKYASSHEWIRKESDGSYTVGITEHAQELLGDMVFVELPEVGDTVTAGEDCAVAESVKAASDIYAPISGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SACD2 (Glycine cleavage system H protein OS=Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM 17024) GN=gcvH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 45/81 (55.56%), Postives = 53/81 (65.43%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVK-HEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   LKY  SHEW +  E    T GITDHAQ+ L +VVFVE+PE G+    G    VVESVKA SD+ SP+SGEVI VN
Sbjct:    2 SELRSELKYLESHEWARVEEDGTVTIGITDHAQEALGDVVFVEVPEVGSQVSIGEEAGVVESVKAASDIYSPVSGEVIAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BARBK (Glycine cleavage system H protein OS=Bartonella bacilliformis (strain ATCC 35685 / KC583) GN=gcvH PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 1.541e-16
Identity = 39/72 (54.17%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  154 YASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +   HEW+  EG +AT GIT +AQ+ L ++VFV+LP+ G    QG    VVESVKA SDV SPI GEV+E+N
Sbjct:    6 FTQDHEWLNIEGEIATVGITHYAQEQLGDLVFVDLPQCGTQLSQGDSAAVVESVKAASDVYSPIDGEVVEIN 77          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVY (Glycine cleavage system H protein OS=Vibrio vulnificus (strain YJ016) GN=gcvH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+  SHEWV+  G    T GI++HAQ+ L +VVFVELPE  A  + G  F +VESVKA SD+ +P++GEV+EVN
Sbjct:    5 LKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVN 79          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_VIBVU (Glycine cleavage system H protein OS=Vibrio vulnificus GN=gcvH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 41/75 (54.67%), Postives = 54/75 (72.00%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+  SHEWV+  G    T GI++HAQ+ L +VVFVELPE  A  + G  F +VESVKA SD+ +P++GEV+EVN
Sbjct:    5 LKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPELEAEIEAGESFSLVESVKAASDIYAPVTGEVVEVN 79          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_RALSO (Glycine cleavage system H protein OS=Ralstonia solanacearum GN=gcvH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 43/75 (57.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKY  SHEWV+ E     T GITD AQ+ L ++VF+ELP+TG   KQG    VVESVKA SD+ +P+SGEVI  N
Sbjct:    8 LKYTESHEWVRTEADGTLTIGITDLAQEQLGDIVFLELPDTGRQVKQGEAIAVVESVKAASDIYAPVSGEVIASN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_METNO (Glycine cleavage system H protein OS=Methylobacterium nodulans (strain ORS2060 / LMG 21967) GN=gcvH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 39/74 (52.70%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L++   HEW+K +G +AT GIT HA + L ++VFVELP+ GA   +G    VVESVKA SDV +P+ GEV E+N
Sbjct:    2 LRFTEEHEWLKLDGEIATVGITSHAAEQLGDLVFVELPKVGAVLTKGEAAAVVESVKAASDVYAPLDGEVTEIN 75          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_HALMA (Probable glycine cleavage system H protein OS=Haloarcula marismortui GN=gcvH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 43/78 (55.13%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            V D L+Y  SHEWV+  G  A  GIT  AQD L +VVFVELP+ G     G  F VVES+KA SDV +P+SG V  VN
Sbjct:    5 VPDDLRYLESHEWVRVAGDTAEVGITAFAQDELGDVVFVELPDEGTELTAGEDFGVVESIKAVSDVYAPVSGTVTAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ANASK (Glycine cleavage system H protein OS=Anaeromyxobacter sp. (strain K) GN=gcvH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            + L+Y   HEW + +GS    GITD AQ  L +VV+VELP+ G   K+G  F VVES KA S++ +PISG+VIEVN
Sbjct:    5 EDLRYTREHEWARRKGSAIVVGITDFAQQQLGDVVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ANAD2 (Glycine cleavage system H protein OS=Anaeromyxobacter dehalogenans (strain 2CP-1 / ATCC BAA-258) GN=gcvH PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 40/76 (52.63%), Postives = 52/76 (68.42%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            + L+Y   HEW + +GS    GITD AQ  L +VV+VELP+ G   K+G  F VVES KA S++ +PISG+VIEVN
Sbjct:    5 EDLRYTREHEWARRKGSAIVVGITDFAQQQLGDVVYVELPDVGDPVKKGESFGVVESTKAVSELFAPISGKVIEVN 80          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_SHEFN1.541e-1655.56Glycine cleavage system H protein OS=Shewanella fr... [more]
GCSH_SACD21.541e-1655.56Glycine cleavage system H protein OS=Saccharophagu... [more]
GCSH_BARBK1.541e-1654.17Glycine cleavage system H protein OS=Bartonella ba... [more]
GCSH_VIBVY2.013e-1654.67Glycine cleavage system H protein OS=Vibrio vulnif... [more]
GCSH_VIBVU2.013e-1654.67Glycine cleavage system H protein OS=Vibrio vulnif... [more]
GCSH_RALSO2.013e-1657.33Glycine cleavage system H protein OS=Ralstonia sol... [more]
GCSH_METNO2.013e-1652.70Glycine cleavage system H protein OS=Methylobacter... [more]
GCSH_HALMA2.013e-1655.13Probable glycine cleavage system H protein OS=Halo... [more]
GCSH_ANASK2.013e-1652.63Glycine cleavage system H protein OS=Anaeromyxobac... [more]
GCSH_ANAD22.013e-1652.63Glycine cleavage system H protein OS=Anaeromyxobac... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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