CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH1_THETN (Glycine cleavage system H protein 1 OS=Thermoanaerobacter tengcongensis GN=gcvH1 PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.013e-16
Identity = 42/78 (53.85%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            VL+ L Y+  H WVK EG  A  GITD+AQD L +  ++ELPE G  F  G    V+ES KA SDV  P+ GEVIEVN
Sbjct:    3 VLEDLYYSKDHVWVKVEGDKAYIGITDYAQDSLGDAEYIELPEVGTEFTAGDVLGVIESAKAASDVYIPVDGEVIEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_YERPY (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype O:3 (strain YPIII) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYA SHEWV+ +G  V + GIT+HAQ+ L ++VFV+LPE G+    G    V ESVKA SD+ +PISGE++ VN
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_YERPS (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYA SHEWV+ +G  V + GIT+HAQ+ L ++VFV+LPE G+    G    V ESVKA SD+ +PISGE++ VN
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_YERPP (Glycine cleavage system H protein OS=Yersinia pestis (strain Pestoides F) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYA SHEWV+ +G  V + GIT+HAQ+ L ++VFV+LPE G+    G    V ESVKA SD+ +PISGE++ VN
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_YERPN (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYA SHEWV+ +G  V + GIT+HAQ+ L ++VFV+LPE G+    G    V ESVKA SD+ +PISGE++ VN
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_YERPG (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Angola) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYA SHEWV+ +G  V + GIT+HAQ+ L ++VFV+LPE G+    G    V ESVKA SD+ +PISGE++ VN
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_YERPE (Glycine cleavage system H protein OS=Yersinia pestis GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYA SHEWV+ +G  V + GIT+HAQ+ L ++VFV+LPE G+    G    V ESVKA SD+ +PISGE++ VN
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_YERPB (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype IB (strain PB1/+) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYA SHEWV+ +G  V + GIT+HAQ+ L ++VFV+LPE G+    G    V ESVKA SD+ +PISGE++ VN
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_YERPA (Glycine cleavage system H protein OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYA SHEWV+ +G  V + GIT+HAQ+ L ++VFV+LPE G+    G    V ESVKA SD+ +PISGE++ VN
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_YERP3 (Glycine cleavage system H protein OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYA SHEWV+ +G  V + GIT+HAQ+ L ++VFV+LPE G+    G    V ESVKA SD+ +PISGE++ VN
Sbjct:    2 SNVPTELKYALSHEWVRADGDGVYSVGITEHAQELLGDMVFVDLPEVGSDVSAGSDCAVAESVKAASDIYAPISGEIVAVN 82          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH1_THETN2.013e-1653.85Glycine cleavage system H protein 1 OS=Thermoanaer... [more]
GCSH_YERPY2.629e-1653.09Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_YERPS2.629e-1653.09Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_YERPP2.629e-1653.09Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPN2.629e-1653.09Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPG2.629e-1653.09Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPE2.629e-1653.09Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERPB2.629e-1653.09Glycine cleavage system H protein OS=Yersinia pseu... [more]
GCSH_YERPA2.629e-1653.09Glycine cleavage system H protein OS=Yersinia pest... [more]
GCSH_YERP32.629e-1653.09Glycine cleavage system H protein OS=Yersinia pseu... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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