CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STACT (Glycine cleavage system H protein OS=Staphylococcus carnosus (strain TM300) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 39/79 (49.37%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG   T GIT++AQ  L ++VFVELPET    ++   F  VESVK  S++ +P+SG V+E+N
Sbjct:    2 AVPEELKYSKEHEWVKVEGDTVTIGITEYAQGELGDIVFVELPETEDDIEESESFGSVESVKTVSELYAPVSGSVVEIN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHELP (Glycine cleavage system H protein OS=Shewanella loihica (strain ATCC BAA-1088 / PV-4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 43/81 (53.09%), Postives = 57/81 (70.37%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVA-TAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW++ E   + T GI++HAQ+ L ++VFVELPE G S   G    V ESVKA SD+ +P+SGEV+ VN
Sbjct:    2 SNIPTELKYASSHEWIRREEDGSYTVGISEHAQELLGDMVFVELPEVGDSVSAGDDCAVAESVKAASDIYAPVSGEVVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_METPB (Glycine cleavage system H protein OS=Methylobacterium populi (strain ATCC BAA-705 / NCIMB 13946 / BJ001) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 40/74 (54.05%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L++   HEW++ +G VAT GIT HA + L ++VFVELP+ G    +G    VVESVKA SDV +P+SGEV EVN
Sbjct:    2 LRFTDEHEWLRLDGDVATVGITAHAAEQLGDLVFVELPKVGVKLTKGEAAAVVESVKAASDVYAPLSGEVTEVN 75          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_METI4 (Glycine cleavage system H protein OS=Methylacidiphilum infernorum (isolate V4) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 38/72 (52.78%), Postives = 50/72 (69.44%), Query Frame = 1
Query:  154 YASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            Y  +HEWV   G VAT GIT+HAQ  L ++V++ELP+ G  F Q     VVESVKA SD+ +P+SGE++ VN
Sbjct:    9 YTDTHEWVNVSGDVATVGITEHAQRELSDIVYIELPKVGERFNQKAVVGVVESVKAASDLYAPVSGEILAVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_LEPBP (Glycine cleavage system H protein OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / ATCC 23582 / Paris) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            DG  Y   HEWVK EG VA  GITD AQ+ L ++VF++LP+ G   K       +ESVKA  D+ SPISGEV+E N
Sbjct:    8 DGYYYTEKHEWVKVEGDVALIGITDFAQNALGDIVFIDLPKPGKQIKAKDSLGTIESVKAAEDLYSPISGEVVETN 83          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_LEPBA (Glycine cleavage system H protein OS=Leptospira biflexa serovar Patoc (strain Patoc 1 / Ames) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 40/76 (52.63%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            DG  Y   HEWVK EG VA  GITD AQ+ L ++VF++LP+ G   K       +ESVKA  D+ SPISGEV+E N
Sbjct:    8 DGYYYTEKHEWVKVEGDVALIGITDFAQNALGDIVFIDLPKPGKQIKAKDSLGTIESVKAAEDLYSPISGEVVETN 83          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_HALLT (Probable glycine cleavage system H protein OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 41/78 (52.56%), Postives = 50/78 (64.10%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            V D  +Y  SHEWV   G     G++D AQD L +VVFVELPE G     G  F VVES+KA SD+ +P+SGEV+ VN
Sbjct:    5 VPDDRRYLESHEWVTTGGDTVRIGVSDFAQDELGDVVFVELPEAGDEITAGEAFGVVESIKAVSDLYAPVSGEVVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BURA4 (Glycine cleavage system H protein OS=Burkholderia ambifaria (strain MC40-6) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 42/81 (51.85%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKY   HEW++ E     T GITDHAQ  L ++VF+ELP  G S   G    VVESVKA SD+ SP+SGE+I +N
Sbjct:    2 SNVPADLKYTDEHEWIRTEADGTLTVGITDHAQSTLGDIVFLELPAVGKSVSAGDAVGVVESVKAASDIYSPVSGEIIAIN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH2_THETN (Glycine cleavage system H protein 2 OS=Thermoanaerobacter tengcongensis GN=gcvH2 PE=3 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 2.629e-16
Identity = 42/78 (53.85%), Postives = 52/78 (66.67%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            VL+GL Y+  HEWVK EG     GITD+AQ  L  +V+VELPE G+    G    VVESVKA SDV +P+  +V+EVN
Sbjct:    3 VLEGLYYSKDHEWVKVEGDKVYIGITDYAQHSLGNIVYVELPEVGSELSAGDVLGVVESVKAASDVYTPVDIKVLEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_COPPD (Glycine cleavage system H protein OS=Coprothermobacter proteolyticus (strain ATCC 35245 / DSM 5265 / BT) GN=gcvH PE=3 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 3.434e-16
Identity = 43/79 (54.43%), Postives = 54/79 (68.35%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVKH-EGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            VL+GLKY+  HEWVK  E +  + GITD AQD L ++VFV LP  G   K G     +ESVK+ SDV SP+SG+V+EVN
Sbjct:    3 VLEGLKYSKEHEWVKVLEDNKVSVGITDFAQDELGDIVFVNLPAVGQEIKVGETLASLESVKSASDVYSPVSGKVVEVN 81          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_STACT2.629e-1649.37Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_SHELP2.629e-1653.09Glycine cleavage system H protein OS=Shewanella lo... [more]
GCSH_METPB2.629e-1654.05Glycine cleavage system H protein OS=Methylobacter... [more]
GCSH_METI42.629e-1652.78Glycine cleavage system H protein OS=Methylacidiph... [more]
GCSH_LEPBP2.629e-1652.63Glycine cleavage system H protein OS=Leptospira bi... [more]
GCSH_LEPBA2.629e-1652.63Glycine cleavage system H protein OS=Leptospira bi... [more]
GCSH_HALLT2.629e-1652.56Probable glycine cleavage system H protein OS=Halo... [more]
GCSH_BURA42.629e-1651.85Glycine cleavage system H protein OS=Burkholderia ... [more]
GCSH2_THETN2.629e-1653.85Glycine cleavage system H protein 2 OS=Thermoanaer... [more]
GCSH_COPPD3.434e-1654.43Glycine cleavage system H protein OS=Coprothermoba... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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