CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_EDWI9 (Glycine cleavage system H protein OS=Edwardsiella ictaluri (strain 93-146) GN=gcvH PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.649e-16
Identity = 42/81 (51.85%), Postives = 54/81 (66.67%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVK-HEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKY +SHEWV+  E  V   GITDHAQ  L ++VFV+LPE GA    G    V ESVKA SD+ SP++GE++ +N
Sbjct:    2 SNVPTELKYTASHEWVRAEENGVFCVGITDHAQSLLGDMVFVDLPEVGAHIDTGAECAVAESVKAASDIYSPLAGEIVAIN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_AERPE (Probable glycine cleavage system H protein OS=Aeropyrum pernix GN=gcvH PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.649e-16
Identity = 38/74 (51.35%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+Y  S EW + E  VAT GITD AQ  L+++V VELPE G   K+G     VES+KAT+D+ +P+SGE+++VN
Sbjct:   21 LRYTESDEWARLEDGVATVGITDFAQKELKDIVGVELPEKGRKVKKGEAVATVESIKATADIYAPLSGEIVDVN 94          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCM (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain M66-2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.990e-16
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+  SHEWV+  G    T GI++HAQ+ L +VVFVELPE  A    G  F +VESVKA SD+ +P++G VIEVN
Sbjct:    5 LKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVN 79          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_VIBCH (Glycine cleavage system H protein OS=Vibrio cholerae GN=gcvH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.990e-16
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+  SHEWV+  G    T GI++HAQ+ L +VVFVELPE  A    G  F +VESVKA SD+ +P++G VIEVN
Sbjct:    5 LKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVN 79          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_VIBC3 (Glycine cleavage system H protein OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Ogawa 395 / O395) GN=gcvH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.990e-16
Identity = 41/75 (54.67%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+  SHEWV+  G    T GI++HAQ+ L +VVFVELPE  A    G  F +VESVKA SD+ +P++G VIEVN
Sbjct:    5 LKFTESHEWVRDNGDGTVTIGISEHAQEMLGDVVFVELPEIDAEIDAGDSFSLVESVKAASDIYAPVTGVVIEVN 79          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STRM5 (Glycine cleavage system H protein OS=Stenotrophomonas maltophilia (strain R551-3) GN=gcvH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.990e-16
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSV-ATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   LK+  SHEW + EG+   T GI+DHAQ  L ++V+VELPE GA+ K      VVESVKA SDV SP+SG ++EVN
Sbjct:    2 SEIPGDLKFLKSHEWARVEGNGRVTVGISDHAQGLLGDLVYVELPEVGATAKANEQIAVVESVKAASDVYSPVSGTIVEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAHJ (Glycine cleavage system H protein OS=Staphylococcus haemolyticus (strain JCSC1435) GN=gcvH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.990e-16
Identity = 38/74 (51.35%), Postives = 51/74 (68.92%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKY+  HEWVK EG+  T GIT++AQ  L ++VFVELPE      +G  F  VESVK  S++ +P+SG+V+E N
Sbjct:    7 LKYSKEHEWVKVEGNTVTIGITEYAQGELGDIVFVELPEVDDEINEGDTFGSVESVKTVSELYAPVSGKVVESN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHEPW (Glycine cleavage system H protein OS=Shewanella piezotolerans (strain WP3 / JCM 13877) GN=gcvH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.990e-16
Identity = 44/81 (54.32%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEWV K E    T GI++HAQ+ L ++VFVELPE G     G    V ESVKA SD+ SP++GEV+ VN
Sbjct:    2 SNIPAELKYASSHEWVRKEEDGSYTVGISEHAQELLGDMVFVELPEVGDDVNAGEDCAVAESVKAASDIYSPLTGEVLAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SHEPA (Glycine cleavage system H protein OS=Shewanella pealeana (strain ATCC 700345 / ANG-SQ1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.990e-16
Identity = 43/81 (53.09%), Postives = 55/81 (67.90%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWV-KHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKYASSHEW+ K E    T GI++HAQ+ L ++VFVELPE G     G    V ESVKA SD+ +P+SGEV+ VN
Sbjct:    2 SNIPAELKYASSHEWIRKEEDGSYTVGISEHAQELLGDMVFVELPEVGDDVNAGEDCAVAESVKAASDIYAPLSGEVVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PROMH (Glycine cleavage system H protein OS=Proteus mirabilis (strain HI4320) GN=gcvH PE=3 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 9.990e-16
Identity = 41/81 (50.62%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVA-TAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   LKYA SHEW++ EG+   T GIT+HAQ+ L ++VFV+LP+ G+    G    V ESVKA SD+ +P+SGE+I VN
Sbjct:    2 SQIPSELKYAQSHEWIRSEGNGEYTIGITEHAQELLGDMVFVDLPDVGSEVDLGDDCAVAESVKAASDIYAPLSGEIIAVN 82          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_EDWI97.649e-1651.85Glycine cleavage system H protein OS=Edwardsiella ... [more]
GCSH_AERPE7.649e-1651.35Probable glycine cleavage system H protein OS=Aero... [more]
GCSH_VIBCM9.990e-1654.67Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBCH9.990e-1654.67Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_VIBC39.990e-1654.67Glycine cleavage system H protein OS=Vibrio choler... [more]
GCSH_STRM59.990e-1653.09Glycine cleavage system H protein OS=Stenotrophomo... [more]
GCSH_STAHJ9.990e-1651.35Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_SHEPW9.990e-1654.32Glycine cleavage system H protein OS=Shewanella pi... [more]
GCSH_SHEPA9.990e-1653.09Glycine cleavage system H protein OS=Shewanella pe... [more]
GCSH_PROMH9.990e-1650.62Glycine cleavage system H protein OS=Proteus mirab... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
back to top