CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAAN (Glycine cleavage system H protein OS=Staphylococcus aureus (strain N315) GN=gcvH PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.809e-18
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VAT GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAAM (Glycine cleavage system H protein OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.809e-18
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VAT GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAA9 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain JH9) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.809e-18
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VAT GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAA2 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain JH1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.809e-18
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VAT GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAA1 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 2.809e-18
Identity = 44/79 (55.70%), Postives = 58/79 (73.42%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VAT GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVATIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_THEPX (Glycine cleavage system H protein OS=Thermoanaerobacter sp. (strain X514) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18
Identity = 44/78 (56.41%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            VL+GL Y+  HEWVK EG  A  GITD+AQ  L  +V++ELPE GA    G    VVESVKA SDV +P+ G+V+EVN
Sbjct:    3 VLEGLYYSKDHEWVKVEGDKAYIGITDYAQHSLGNIVYIELPEVGAELSAGDVLGVVESVKAASDVYTPVDGKVLEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_RHILW (Glycine cleavage system H protein OS=Rhizobium leguminosarum bv. trifolii (strain WSM2304) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18
Identity = 43/74 (58.11%), Postives = 54/74 (72.97%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+   HEW++ EGSVAT GIT++A D L ++VFVELPE GA+F + G    VESVKA SDV  P+ GE+ EVN
Sbjct:    2 LKFTEEHEWLQIEGSVATVGITNYAVDQLGDLVFVELPEVGATFSKNGNAATVESVKAASDVYCPLDGEITEVN 75          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_RHIEC (Glycine cleavage system H protein OS=Rhizobium etli (strain CFN 42 / ATCC 51251) GN=gcvH PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.668e-18
Identity = 43/74 (58.11%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+   HEW+K EG VAT GIT++A D L ++VFVELPE GA+F + G    VESVKA SDV  P+ GE+ EVN
Sbjct:    2 LKFTEEHEWLKIEGDVATVGITNYAVDQLGDLVFVELPEVGATFSKNGNAATVESVKAASDVYCPLDGEITEVN 75          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ALKOO (Glycine cleavage system H protein OS=Alkaliphilus oremlandii (strain OhILAs) GN=gcvH PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.791e-18
Identity = 46/75 (61.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  145 GLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            GL Y+  HEWVK EG+ A  GITD AQ  L E+VFVELPE      QG  F VVESVKA SD  SP+SG+V+EVN
Sbjct:    6 GLLYSKDHEWVKVEGNEAYIGITDFAQHALGEIVFVELPEVDDEIAQGDAFSVVESVKAASDAYSPVSGKVLEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ACIBY (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain AYE) GN=gcvH PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.791e-18
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKYA +HEWVK EG +   GITDHAQD L ++V+VE PE G+    G    VVESVK  SD+++P+SG V+EVN
Sbjct:    7 LKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVN 80          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_STAAN2.809e-1855.70Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAM2.809e-1855.70Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA92.809e-1855.70Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA22.809e-1855.70Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA12.809e-1855.70Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_THEPX3.668e-1856.41Glycine cleavage system H protein OS=Thermoanaerob... [more]
GCSH_RHILW3.668e-1858.11Glycine cleavage system H protein OS=Rhizobium leg... [more]
GCSH_RHIEC3.668e-1858.11Glycine cleavage system H protein OS=Rhizobium etl... [more]
GCSH_ALKOO4.791e-1861.33Glycine cleavage system H protein OS=Alkaliphilus ... [more]
GCSH_ACIBY4.791e-1856.76Glycine cleavage system H protein OS=Acinetobacter... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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