CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ACIBT (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=gcvH PE=3 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 4.791e-18
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKYA +HEWVK EG +   GITDHAQD L ++V+VE PE G+    G    VVESVK  SD+++P+SG V+EVN
Sbjct:    7 LKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ACIBC (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain ACICU) GN=gcvH PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.791e-18
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKYA +HEWVK EG +   GITDHAQD L ++V+VE PE G+    G    VVESVK  SD+++P+SG V+EVN
Sbjct:    7 LKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ACIB5 (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain AB0057) GN=gcvH PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.791e-18
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKYA +HEWVK EG +   GITDHAQD L ++V+VE PE G+    G    VVESVK  SD+++P+SG V+EVN
Sbjct:    7 LKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ACIB3 (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain AB307-0294) GN=gcvH PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 4.791e-18
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKYA +HEWVK EG +   GITDHAQD L ++V+VE PE G+    G    VVESVK  SD+++P+SG V+EVN
Sbjct:    7 LKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQAGVVESVKTASDIHAPVSGTVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_THEP3 (Glycine cleavage system H protein OS=Thermoanaerobacter pseudethanolicus (strain ATCC 33223 / 39E) GN=gcvH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.257e-18
Identity = 43/78 (55.13%), Postives = 54/78 (69.23%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            V++GL Y+  HEWVK EG  A  GITD+AQ  L  +V++ELPE GA    G    VVESVKA SDV +P+ G+V+EVN
Sbjct:    3 VIEGLYYSKDHEWVKVEGDKAYIGITDYAQHSLGNIVYIELPEVGAELSAGDVLGVVESVKAASDVYTPVDGKVLEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MARMS (Glycine cleavage system H protein OS=Marinomonas sp. (strain MWYL1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.257e-18
Identity = 46/81 (56.79%), Postives = 56/81 (69.14%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++ + LKYA SHEWV   G    T GITDHAQD L +VV+VELPE G        F +VESVKA SD+ +P++GEVIEVN
Sbjct:    2 STIPENLKYADSHEWVLDNGDGTVTVGITDHAQDLLGDVVYVELPEVGTEVTATEQFSLVESVKAASDIYAPVNGEVIEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ACIBS (Glycine cleavage system H protein OS=Acinetobacter baumannii (strain SDF) GN=gcvH PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 6.257e-18
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKYA +HEWVK EG +   GITDHAQD L ++V+VE PE G+    G    VVESVK  SD+++P+SG V+EVN
Sbjct:    7 LKYARTHEWVKIEGDLVITGITDHAQDELGDLVYVETPEVGSQVTAGEQARVVESVKTASDIHAPVSGTVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PARL1 (Glycine cleavage system H protein OS=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) GN=gcvH PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.172e-18
Identity = 42/77 (54.55%), Postives = 55/77 (71.43%), Query Frame = 1
Query:  139 LDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +  +++   HEWV+ +G +AT GITD+AQ+ L +VVFVELPE G     G    VVESVKA S+V SP+SGEVI+VN
Sbjct:    1 MSDIRFTDQHEWVRVDGDIATIGITDYAQEQLGDVVFVELPEVGKDIAAGDEAAVVESVKAASEVYSPVSGEVIDVN 77          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_ERWCT (Glycine cleavage system H protein OS=Erwinia carotovora subsp. atroseptica GN=gcvH PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 1.067e-17
Identity = 45/81 (55.56%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYA+SHEWV HEG  + + GIT+HAQ+ L ++VF++LPE G     G    V ESVKA SD+ +PISGEV+EVN
Sbjct:    2 SNVPTELKYATSHEWVLHEGDGIYSVGITEHAQELLGDMVFIDLPEVGTVVAAGDDCAVAESVKAASDIYAPISGEVVEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAAT (Glycine cleavage system H protein OS=Staphylococcus aureus (strain USA300 / TCH1516) GN=gcvH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VA  GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_ACIBT4.791e-1856.76Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_ACIBC4.791e-1856.76Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_ACIB54.791e-1856.76Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_ACIB34.791e-1856.76Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_THEP36.257e-1855.13Glycine cleavage system H protein OS=Thermoanaerob... [more]
GCSH_MARMS6.257e-1856.79Glycine cleavage system H protein OS=Marinomonas s... [more]
GCSH_ACIBS6.257e-1856.76Glycine cleavage system H protein OS=Acinetobacter... [more]
GCSH_PARL18.172e-1854.55Glycine cleavage system H protein OS=Parvibaculum ... [more]
GCSH_ERWCT1.067e-1755.56Glycine cleavage system H protein OS=Erwinia carot... [more]
GCSH_STAAT1.394e-1754.43Glycine cleavage system H protein OS=Staphylococcu... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
back to top