CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CLOBM (Glycine cleavage system H protein OS=Clostridium botulinum (strain Loch Maree / Type A3) GN=gcvH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            VL+ L Y   HEW++ E + A  GI+D AQ  L ++VFVELPE      +G  F  +ESVKA SD   P+SG ++E+N
Sbjct:    3 VLNNLLYTGDHEWIRVEDNKAYIGISDCAQRMLSDIVFVELPEVDDEIAKGETFATIESVKAASDSYMPVSGTIVEIN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CLOBJ (Glycine cleavage system H protein OS=Clostridium botulinum (strain Kyoto / Type A2) GN=gcvH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 36/78 (46.15%), Postives = 49/78 (62.82%), Query Frame = 1
Query:  136 VLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            VL+ L Y   HEW++ E + A  GI+D AQ  L ++VFVELPE      +G  F  +ESVKA SD   P+SG ++E+N
Sbjct:    3 VLNNLLYTGDHEWIRVEDNKAYIGISDCAQRMLSDIVFVELPEVDDEIAKGETFATIESVKAASDSYMPVSGTIVEIN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BACFR (Glycine cleavage system H protein OS=Bacteroides fragilis GN=gcvH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 33/74 (44.59%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +KY + HEW++ EG VA  GITD+AQ+ L ++VFV++P  G + +    F  +E VK  SD+  P++GEV+E N
Sbjct:    7 VKYTNEHEWIRLEGDVAYVGITDYAQEQLGDIVFVDIPTEGETLEAEEVFGTIEVVKTISDLFLPVAGEVVEQN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BACA2 (Glycine cleavage system H protein OS=Bacillus amyloliquefaciens (strain FZB42) GN=gcvH PE=3 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.595e-13
Identity = 38/74 (51.35%), Postives = 47/74 (63.51%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            ++Y+  HEWVK E   A  GIT  AQ  L ++VFVELPE GA  K    F  VESVK  S++ +PI+G V EVN
Sbjct:    7 MRYSKEHEWVKVEDGKARIGITHFAQAELGDIVFVELPEVGAEIKADEPFGSVESVKTVSELYAPINGTVTEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SYNJB (Glycine cleavage system H protein OS=Synechococcus sp. GN=gcvH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 35/74 (47.30%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+Y  +HE++  E  +A  GIT +A D L ++VFV LPE G   ++G  F  VESVKA  D+ +P+SGEV+ VN
Sbjct:    9 LRYVDTHEYIHVEDDIAVIGITAYAVDQLGDIVFVGLPEEGTEIEKGESFGSVESVKAVEDLYAPLSGEVVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SYNJA (Glycine cleavage system H protein OS=Synechococcus sp. (strain JA-3-3Ab) GN=gcvH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 34/74 (45.95%), Postives = 50/74 (67.57%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+Y  +HE+++ E  +A  GIT +A D L ++VFV LPE G   ++G  F  VESVKA  D+ +P+SG+V+ VN
Sbjct:    9 LRYVDTHEYIRVEDDIAVIGITAYAVDQLGDIVFVGLPEEGTEIEKGESFGSVESVKAVEDLYAPVSGKVVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_LISMO (Glycine cleavage system H protein OS=Listeria monocytogenes GN=gcvH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L Y   HEWVK +      GITD AQD L ++VFVELPE G +  +G     +ESVK  SD  +P++G+V+ VN
Sbjct:    7 LLYTEEHEWVKADDGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_LISMH (Glycine cleavage system H protein OS=Listeria monocytogenes serotype 4a (strain HCC23) GN=gcvH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L Y   HEWVK +      GITD AQD L ++VFVELPE G +  +G     +ESVK  SD  +P++G+V+ VN
Sbjct:    7 LLYTEEHEWVKADDGSYVIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_DEIGD (Glycine cleavage system H protein OS=Deinococcus geothermalis (strain DSM 11300) GN=gcvH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 39/74 (52.70%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKYA SHEW+  +G+V   GI+D AQD L +VV+VELPE G     G    VVESVK  SD+ +P SG ++ VN
Sbjct:    7 LKYAPSHEWLAPDGTV---GISDFAQDQLGDVVYVELPEVGRVVTAGETVAVVESVKTASDIYAPASGTIVAVN 77          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CYAP7 (Glycine cleavage system H protein OS=Cyanothece sp. (strain PCC 7424) GN=gcvH PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 36/76 (47.37%), Postives = 51/76 (67.11%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D L+Y  SHE+V+ +G +AT GI+  A + L ++VF+ELPE G + + G  F  +ESVKA  D+  P+SG VIE N
Sbjct:    7 DDLRYLDSHEYVRLDGEIATIGISAFAIEQLGDIVFLELPEVGEAVEVGESFGHIESVKAVEDLYPPVSGTVIERN 82          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_CLOBM1.595e-1346.15Glycine cleavage system H protein OS=Clostridium b... [more]
GCSH_CLOBJ1.595e-1346.15Glycine cleavage system H protein OS=Clostridium b... [more]
GCSH_BACFR1.595e-1344.59Glycine cleavage system H protein OS=Bacteroides f... [more]
GCSH_BACA21.595e-1351.35Glycine cleavage system H protein OS=Bacillus amyl... [more]
GCSH_SYNJB2.083e-1347.30Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_SYNJA2.083e-1345.95Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_LISMO2.083e-1347.30Glycine cleavage system H protein OS=Listeria mono... [more]
GCSH_LISMH2.083e-1347.30Glycine cleavage system H protein OS=Listeria mono... [more]
GCSH_DEIGD2.083e-1352.70Glycine cleavage system H protein OS=Deinococcus g... [more]
GCSH_CYAP72.083e-1347.37Glycine cleavage system H protein OS=Cyanothece sp... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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