CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CHICK (Glycine cleavage system H protein, mitochondrial OS=Gallus gallus GN=GCSH PE=1 SV=2)

HSP 1 Score: 74.3294 bits (181), Expect = 2.083e-13
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 1
Query:   79 RISCASKTPAFALSRCFSSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            R+S   + PA       S +L   K+   HEW+  E  + T GI++ AQ+ L +VV+  LPE G    +   F  +ESVKA S++ SP++GEV ++N
Sbjct:   19 RLSLRPQVPAVRRLGTGSLLLSARKFTDKHEWISVENGIGTVGISNFAQEALGDVVYCSLPEIGTKLNKDDEFGALESVKAASELYSPLTGEVTDIN 115          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_LISW6 (Glycine cleavage system H protein OS=Listeria welshimeri serovar 6b (strain ATCC 35897 / DSM 20650 / SLCC5334) GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.721e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L Y   HEWVK +      GITD AQD L ++VFVELPE G +  +G     +ESVK  SD  +P++G+V+ VN
Sbjct:    7 LLYTEEHEWVKADDGSYIIGITDFAQDQLGDIVFVELPEVGDTVTKGDSIGSIESVKTVSDFYAPVTGKVVAVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_LISMF (Glycine cleavage system H protein OS=Listeria monocytogenes serotype 4b (strain F2365) GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.721e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L Y   HEWVK +      GITD AQD L ++VFVELPE G +  +G     +ESVK  SD  +P++G+V+ VN
Sbjct:    7 LLYTEEHEWVKADEGSYVIGITDFAQDQLGDIVFVELPEVGDTVAKGDSIGSIESVKTVSDFYAPVTGKVVAVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_LISMC (Glycine cleavage system H protein OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.721e-13
Identity = 35/74 (47.30%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L Y   HEWVK +      GITD AQD L ++VFVELPE G +  +G     +ESVK  SD  +P++G+V+ VN
Sbjct:    7 LLYTEEHEWVKADEGSYVIGITDFAQDQLGDIVFVELPEVGDTVAKGDSIGSIESVKTVSDFYAPVTGKVVAVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_BACP2 (Glycine cleavage system H protein OS=Bacillus pumilus (strain SAFR-032) GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 2.721e-13
Identity = 36/74 (48.65%), Postives = 46/74 (62.16%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+Y+  HEWVK EG     GIT  AQ  L ++VFVELPE G        F  VESVK  S++ +PI+G ++EVN
Sbjct:    7 LRYSEEHEWVKVEGEKVRIGITHFAQSELGDIVFVELPEVGDKITADEPFGSVESVKTVSELYAPINGTIVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SYNSC (Glycine cleavage system H protein OS=Synechococcus sp. (strain CC9605) GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13
Identity = 34/76 (44.74%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D  ++A SHE+   +G +   GI+  A D L ++VFV+LP+ GAS  +G  F  VESVKA  D+ +PI+GEV++ N
Sbjct:    7 DSFRFADSHEYANADGELVRVGISAFAVDQLGDIVFVDLPDVGASLAKGTSFGSVESVKAVEDMYAPIAGEVVQRN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PORGI (Glycine cleavage system H protein OS=Porphyromonas gingivalis GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKY+  HEW + EG V   GITD+AQ  L E+V+V++   G + +    F  +E+VK  SD+  PI+GEV+EVN
Sbjct:    7 LKYSKDHEWARQEGDVVFIGITDYAQGELGEIVYVDVTTEGETLEADEVFGSIEAVKTVSDLMMPIAGEVLEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PORG3 (Glycine cleavage system H protein OS=Porphyromonas gingivalis (strain ATCC 33277 / DSM 20709 / JCM 12257) GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13
Identity = 34/74 (45.95%), Postives = 48/74 (64.86%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKY+  HEW + EG V   GITD+AQ  L E+V+V++   G + +    F  +E+VK  SD+  PI+GEV+EVN
Sbjct:    7 LKYSKDHEWARQEGDVVFIGITDYAQGELGEIVYVDVTTEGETLEADEVFGSIEAVKTVSDLMMPIAGEVLEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PELPB (Glycine cleavage system H protein OS=Pelodictyon phaeoclathratiforme (strain DSM 5477 / BU-1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 3.553e-13
Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVK--HEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            ++ + L+Y   HEW+K   +GS A  GITD AQ  L ++VFVEL   G   KQ   F  VE+VK  +D+ +P++GE++E+N
Sbjct:    2 TIPEDLRYTKDHEWIKLLEDGSTALVGITDFAQHELGDIVFVELKSAGTVLKQHEVFGTVEAVKTVADLFAPVAGELLELN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STRCO (Glycine cleavage system H protein OS=Streptomyces coelicolor GN=gcvH PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.641e-13
Identity = 37/75 (49.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  148 LKYASSHEWVKH-EGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+Y+  HEW+   E  V+T GIT+HA + L +VVFV+LPE G S   G     +ES K+ SD+ SP+SGE+ EVN
Sbjct:    7 LRYSKEHEWLSGAEDGVSTVGITEHAANALGDVVFVQLPEVGDSVTAGETCGELESTKSVSDLYSPVSGEITEVN 81          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_CHICK2.083e-1337.11Glycine cleavage system H protein, mitochondrial O... [more]
GCSH_LISW62.721e-1347.30Glycine cleavage system H protein OS=Listeria wels... [more]
GCSH_LISMF2.721e-1347.30Glycine cleavage system H protein OS=Listeria mono... [more]
GCSH_LISMC2.721e-1347.30Glycine cleavage system H protein OS=Listeria mono... [more]
GCSH_BACP22.721e-1348.65Glycine cleavage system H protein OS=Bacillus pumi... [more]
GCSH_SYNSC3.553e-1344.74Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_PORGI3.553e-1345.95Glycine cleavage system H protein OS=Porphyromonas... [more]
GCSH_PORG33.553e-1345.95Glycine cleavage system H protein OS=Porphyromonas... [more]
GCSH_PELPB3.553e-1343.21Glycine cleavage system H protein OS=Pelodictyon p... [more]
GCSH_STRCO4.641e-1349.33Glycine cleavage system H protein OS=Streptomyces ... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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