CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCTU (Glycine cleavage system H protein OS=Mycobacterium tuberculosis GN=gcvH PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   L Y + HEW++  G      GITD+AQ  L +VVFV+LP  G +   G  F  VES K+ SD+ +PISG+V EVN
Sbjct:    2 SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCTA (Glycine cleavage system H protein OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=gcvH PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.350e-12
Identity = 37/81 (45.68%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   L Y + HEW++  G      GITD+AQ  L +VVFV+LP  G +   G  F  VES K+ SD+ +PISG+V EVN
Sbjct:    2 SDIPSDLHYTAEHEWIRRSGDDTVRVGITDYAQSALGDVVFVQLPVIGTAVTAGETFGEVESTKSVSDLYAPISGKVSEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SYNS9 (Glycine cleavage system H protein OS=Synechococcus sp. (strain CC9902) GN=gcvH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1
Query:  151 KYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            ++A SHE+   +G +   GI+  A D L ++VFV+LP+ GAS  +G  F  VESVKA  D+ +PI+GEV+E N
Sbjct:   10 RFADSHEYAHLDGELIRVGISAFAVDQLGDIVFVDLPDVGASLDKGTSFGSVESVKAVEDMYAPIAGEVVERN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PROMA (Glycine cleavage system H protein OS=Prochlorococcus marinus GN=gcvH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 34/73 (46.58%), Postives = 48/73 (65.75%), Query Frame = 1
Query:  151 KYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            ++A SHE+   EG +   GI+  A D L ++VFV+LP  G   +QG  F  VESVKA  D+N+PI GEV+++N
Sbjct:   10 RFADSHEYACPEGDLVRIGISAFAVDQLGDIVFVDLPGIGTLLEQGISFGSVESVKAVEDMNAPIGGEVLQIN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PELLD (Glycine cleavage system H protein OS=Pelodictyon luteolum (strain DSM 273) GN=gcvH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  148 LKYASSHEWVK--HEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+Y   HEW++   +G+ A  GITD AQ  L ++VFVEL   G + K+   F  VE+VK  +D+ +P++GE++EVN
Sbjct:    7 LRYTKDHEWIQLLDDGATALVGITDFAQSELGDIVFVELKPAGTALKEHEIFGTVEAVKTVADLFAPVAGEILEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CHLTE (Glycine cleavage system H protein OS=Chlorobium tepidum GN=gcvH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 34/81 (41.98%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVK--HEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            ++ D L+Y   HEW+K   +G  A  GITD AQ  L ++VFVE    G      G F  VE+VK  +D+ +P +GE++EVN
Sbjct:    2 NIPDNLRYTKDHEWIKLLEDGLTALVGITDFAQSELGDIVFVETKPVGTKVAAHGTFGTVEAVKTVADLFAPAAGEIVEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CHLP8 (Glycine cleavage system H protein OS=Chlorobaculum parvum (strain NCIB 8327) GN=gcvH PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.763e-12
Identity = 33/81 (40.74%), Postives = 49/81 (60.49%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVK--HEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            ++ D L+Y   HEW++   +G  A  GITD AQ  L ++VFVE    G      G F  VE+VK  +D+ +P++GE++EVN
Sbjct:    2 NIPDNLRYTKDHEWLQLLDDGVTAVVGITDFAQSELGDIVFVETKPVGTKVAAHGAFGTVEAVKTVADLFAPVAGEIVEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SYNS3 (Glycine cleavage system H protein OS=Synechococcus sp. (strain CC9311) GN=gcvH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 32/76 (42.11%), Postives = 50/76 (65.79%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D  ++A SHE+V+ E  +   G++ +A D L ++VFV+LPE G    +G  F  VESVKA  ++ +PI+G+VI+ N
Sbjct:    7 DQFRFADSHEYVRQEAELVRVGLSAYAVDQLGDIVFVDLPEVGDDLSRGTSFGTVESVKAVEEMYAPITGKVIQRN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PROM9 (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain MIT 9312) GN=gcvH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 33/76 (43.42%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D L YA +HE+V  E  +   G+++ A D L ++VFVEL + GA+ ++G  F  +ESVKA  +V  P SGE++ VN
Sbjct:    7 DNLNYADTHEYVLEEEGLLKIGVSEFAIDQLGDIVFVELADQGATLEKGETFGTIESVKAVEEVYLPFSGEIVSVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_DROME (Glycine cleavage system H protein, mitochondrial OS=Drosophila melanogaster GN=ppl PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 37/74 (50.00%), Postives = 49/74 (66.22%), Query Frame = 1
Query:  151 KYASSHEWVKH-EGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +Y + HEWV+   GS A  GI+ +AQ+ L +VVF +LPE G   KQ      +ESVKA S+V SP+SG+VIE N
Sbjct:   42 RYTNKHEWVEVVSGSNAIVGISSYAQEALGDVVFAQLPEPGTELKQDDECGALESVKAASEVYSPVSGKVIEKN 115          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_MYCTU1.350e-1245.68Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_MYCTA1.350e-1245.68Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_SYNS91.763e-1246.58Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_PROMA1.763e-1246.58Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_PELLD1.763e-1243.42Glycine cleavage system H protein OS=Pelodictyon l... [more]
GCSH_CHLTE1.763e-1241.98Glycine cleavage system H protein OS=Chlorobium te... [more]
GCSH_CHLP81.763e-1240.74Glycine cleavage system H protein OS=Chlorobaculum... [more]
GCSH_SYNS32.303e-1242.11Glycine cleavage system H protein OS=Synechococcus... [more]
GCSH_PROM92.303e-1243.42Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_DROME2.303e-1250.00Glycine cleavage system H protein, mitochondrial O... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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