CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CYTH3 (Glycine cleavage system H protein OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=gcvH PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 32/74 (43.24%), Postives = 47/74 (63.51%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKY+  HEWV+ EG  A  GITD AQ  L ++V++++   G +  +   F  +E+VK  SD+  P+SGEV+E N
Sbjct:    7 LKYSKDHEWVRVEGQTAYVGITDFAQKELGDIVYLDVTSVGQTIDKEAIFGTIEAVKTVSDLFMPVSGEVLEFN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH1_PSESM (Glycine cleavage system H protein 1 OS=Pseudomonas syringae pv. tomato GN=gcvH1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 2.303e-12
Identity = 40/76 (52.63%), Postives = 53/76 (69.74%), Query Frame = 1
Query:  148 LKYASSHEWVKHE--GSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L++ + HEW++ E  GSV T GIT +AQ+ L +VVFV+LPE  A + Q     VVESVKA S +N P+ GEV+EVN
Sbjct:    4 LRFTADHEWLRAEADGSV-TVGITPYAQESLGDVVFVQLPELQA-YAQHAEVSVVESVKAASSINMPLDGEVVEVN 77          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PSYIN (Glycine cleavage system H protein OS=Psychromonas ingrahamii (strain 37) GN=gcvH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 34/75 (45.33%), Postives = 52/75 (69.33%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVA-TAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L +  +HEW+   G  + T GI++ AQ  L +VVFV++PE G + + G  F +VESVKA SD+ +P++GE+IE+N
Sbjct:    5 LMFTDTHEWILDNGDGSVTIGISNQAQQLLGDVVFVDMPEVGDNTQAGETFSLVESVKAASDLYAPVTGEIIEIN 79          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_MYCS2 (Glycine cleavage system H protein OS=Mycobacterium smegmatis GN=gcvH PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 36/81 (44.44%), Postives = 48/81 (59.26%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S +   L Y S HEWV   G      GITD+AQ  L +VVFV+LP+ GA    G  F  VES K+ SD+ +P++ +V+ VN
Sbjct:    2 SEIPADLYYTSEHEWVLRTGDDTVRVGITDYAQSALGDVVFVQLPDVGADVASGDAFGEVESTKSVSDLYAPVTAKVVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_GRAFK (Glycine cleavage system H protein OS=Gramella forsetii (strain KT0803) GN=gcvH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 33/74 (44.59%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LKY   HEWVK +G   T G+TD AQ  L ++V+VE+     +  +   F  VE+VK  SD+  P+SGE+IE N
Sbjct:    7 LKYTKDHEWVKIDGDTVTIGVTDFAQGELGDIVYVEVETLDETLDKEEVFGTVEAVKTVSDLYMPVSGEIIEFN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_CLAMS (Glycine cleavage system H protein OS=Clavibacter michiganensis subsp. sepedonicus (strain ATCC 33113 / JCM 9667) GN=gcvH PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 3.008e-12
Identity = 35/74 (47.30%), Postives = 45/74 (60.81%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+Y + HEWV  +G VAT GIT +A D L +VVFVELP  G     G     +ES K+  ++ +PI G V EVN
Sbjct:    7 LQYTAEHEWVLIDGDVATVGITSYAADKLGDVVFVELPAVGDELAGGSVVGEIESTKSVGELFAPIDGTVTEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STRAW (Glycine cleavage system H protein OS=Streptomyces avermitilis GN=gcvH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 34/75 (45.33%), Postives = 50/75 (66.67%), Query Frame = 1
Query:  148 LKYASSHEWVKH-EGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            L+Y+  HEW+   E  V+T GIT+HA + L +VV+V+LPE G +   G     +ES K+ SD+ SP++GEV+E N
Sbjct:    7 LRYSKEHEWLSGAEDGVSTVGITEHAANALGDVVYVQLPEVGDTVTAGETCGELESTKSVSDLYSPVTGEVVEAN 81          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PROMM (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain MIT 9313) GN=gcvH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D  ++A +HE+   +G +   GI+  A D L ++VFV+LPE G    +G  F  VESVKA  D+++PISGE++ +N
Sbjct:    7 DHFRFADTHEYASLDGELVRIGISAFAVDQLGDIVFVDLPEVGDRLNRGTTFGSVESVKAVEDLHAPISGELVRIN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PROM3 (Glycine cleavage system H protein OS=Prochlorococcus marinus (strain MIT 9303) GN=gcvH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 32/76 (42.11%), Postives = 49/76 (64.47%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D  ++A +HE+   +G +   GI+  A D L ++VFV+LPE G    +G  F  VESVKA  D+++PISGE++ +N
Sbjct:    7 DHFRFADTHEYASLDGDLVRVGISAFAVDQLGDIVFVDLPEVGDLLNRGTTFGSVESVKAVEDLHAPISGELVRIN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_POLNS (Glycine cleavage system H protein OS=Polynucleobacter necessarius (strain STIR1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 3.928e-12
Identity = 32/77 (41.56%), Postives = 50/77 (64.94%), Query Frame = 1
Query:  142 DGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            D  K+A +HEW   E   +   GI++HAQ+ L +V+F + P+     KQG    V+ESVKA SD+++P+SGE++ +N
Sbjct:    5 DTFKFAETHEWADQEDDGLIWVGISNHAQEALGDVMFFQAPKLDQQVKQGEAIAVIESVKAASDIHAPVSGEIVALN 81          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_CYTH32.303e-1243.24Glycine cleavage system H protein OS=Cytophaga hut... [more]
GCSH1_PSESM2.303e-1252.63Glycine cleavage system H protein 1 OS=Pseudomonas... [more]
GCSH_PSYIN3.008e-1245.33Glycine cleavage system H protein OS=Psychromonas ... [more]
GCSH_MYCS23.008e-1244.44Glycine cleavage system H protein OS=Mycobacterium... [more]
GCSH_GRAFK3.008e-1244.59Glycine cleavage system H protein OS=Gramella fors... [more]
GCSH_CLAMS3.008e-1247.30Glycine cleavage system H protein OS=Clavibacter m... [more]
GCSH_STRAW3.928e-1245.33Glycine cleavage system H protein OS=Streptomyces ... [more]
GCSH_PROMM3.928e-1242.11Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_PROM33.928e-1242.11Glycine cleavage system H protein OS=Prochlorococc... [more]
GCSH_POLNS3.928e-1241.56Glycine cleavage system H protein OS=Polynucleobac... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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