CX300440

Overview
NameCX300440
Unique NameCX300440
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length369
Libraries
Library NameType
SaltLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAAE (Glycine cleavage system H protein OS=Staphylococcus aureus (strain Newman) GN=gcvH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VA  GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAAC (Glycine cleavage system H protein OS=Staphylococcus aureus (strain COL) GN=gcvH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VA  GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAA8 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain NCTC 8325) GN=gcvH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VA  GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_STAA3 (Glycine cleavage system H protein OS=Staphylococcus aureus (strain USA300) GN=gcvH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 43/79 (54.43%), Postives = 57/79 (72.15%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + LKY+  HEWVK EG+VA  GIT++AQ  L ++VFVELPET     +G  F  VESVK  S++ +PISG+V+EVN
Sbjct:    2 AVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_SERP5 (Glycine cleavage system H protein OS=Serratia proteamaculans (strain 568) GN=gcvH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 46/81 (56.79%), Postives = 59/81 (72.84%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   LKYASSHEWV+ EG+ V T GIT+HAQ+ L ++VFV+LPE G +   G    V ESVKA SD+ +PISGE++ VN
Sbjct:    2 SNVPTELKYASSHEWVRSEGNGVYTVGITEHAQELLGDMVFVDLPEVGRTVAAGEDCAVAESVKAASDIYAPISGEIVAVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_LARHH (Glycine cleavage system H protein OS=Laribacter hongkongensis (strain HLHK9) GN=gcvH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 44/81 (54.32%), Postives = 58/81 (71.60%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGS-VATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S++   LKY +SHEWV+ EG  V T G+T HAQ+ L ++V++ELP  G    +G G  VVESVKA SDV +PI+GEV+EVN
Sbjct:    2 SNIPADLKYVASHEWVRDEGDGVVTVGVTFHAQELLGDIVYIELPAVGQVLAEGDGAGVVESVKAASDVYAPIAGEVLEVN 82          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_HALOH (Glycine cleavage system H protein OS=Halothermothrix orenii (strain H 168 / OCM 544 / DSM 9562) GN=gcvH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 41/79 (51.90%), Postives = 53/79 (67.09%), Query Frame = 1
Query:  133 SVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +V + L Y  +HEW+K +G  A  G+TD+AQ  L ++VFVELPE    F Q  GF V+ESVKA SDV  P+ GEV+E N
Sbjct:    2 NVPENLMYTKNHEWIKVDGDTALVGVTDYAQKELGDIVFVELPEVSDEFAQSEGFAVLESVKAVSDVYLPVGGEVLEAN 80          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_AGRVS (Glycine cleavage system H protein OS=Agrobacterium vitis (strain S4 / ATCC BAA-846) GN=gcvH PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.394e-17
Identity = 42/74 (56.76%), Postives = 53/74 (71.62%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            LK+ S HEW++ EG +AT GIT HA + L ++VFVELPE GA+F + G    VESVKA SDV  P+ GEV E+N
Sbjct:    2 LKFTSEHEWLQIEGDIATVGITAHAAEQLGDLVFVELPEVGATFAKDGQAATVESVKAASDVYCPLDGEVTEIN 75          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_PHEZH (Glycine cleavage system H protein OS=Phenylobacterium zucineum (strain HLK1) GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.821e-17
Identity = 41/74 (55.41%), Postives = 52/74 (70.27%), Query Frame = 1
Query:  148 LKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            +++   HEWV  +G VAT GIT HA + L +VVFVE+PE G   K G  F VVESVKA SDV +P++GEV+E N
Sbjct:    1 MRFTKDHEWVALDGDVATIGITAHAAEQLGDVVFVEVPEVGRQVKAGDAFAVVESVKAASDVYAPVTGEVVEAN 74          
BLAST of CX300440 vs. ExPASy Swiss-Prot
Match: GCSH_HERA2 (Glycine cleavage system H protein OS=Herpetosiphon aurantiacus (strain ATCC 23779 / DSM 785) GN=gcvH PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.821e-17
Identity = 42/80 (52.50%), Postives = 56/80 (70.00%), Query Frame = 1
Query:  130 SSVLDGLKYASSHEWVKHEGSVATAGITDHAQDHLEEVVFVELPETGASFKQGGGFWVVESVKATSDVNSPISGEVIEVN 369
            S+V   L Y   HEWV+ +G+ A  GIT+HAQ  L +VVFVELP+ G SF+ G  F  VESVKA S++ +P+SGE+ E+N
Sbjct:    2 SNVPHELLYTKEHEWVRIDGNSAVVGITEHAQRELGDVVFVELPDVGKSFEVGEPFGTVESVKAVSEIYAPLSGEITEIN 81          
The following BLAST results are available for this feature:
BLAST of CX300440 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 433
Match NameE-valueIdentityDescription
GCSH_STAAE1.394e-1754.43Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAAC1.394e-1754.43Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA81.394e-1754.43Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_STAA31.394e-1754.43Glycine cleavage system H protein OS=Staphylococcu... [more]
GCSH_SERP51.394e-1756.79Glycine cleavage system H protein OS=Serratia prot... [more]
GCSH_LARHH1.394e-1754.32Glycine cleavage system H protein OS=Laribacter ho... [more]
GCSH_HALOH1.394e-1751.90Glycine cleavage system H protein OS=Halothermothr... [more]
GCSH_AGRVS1.394e-1756.76Glycine cleavage system H protein OS=Agrobacterium... [more]
GCSH_PHEZH1.821e-1755.41Glycine cleavage system H protein OS=Phenylobacter... [more]
GCSH_HERA21.821e-1752.50Glycine cleavage system H protein OS=Herpetosiphon... [more]

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Properties
Property NameValue
Genbank descriptionC07010C06SK SaltLeaf1 Citrus clementina cDNA clone C07010C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX300440 ID=CX300440; Name=CX300440; organism=Citrus clementina; type=EST; length=369bp
GACTTGGAGCTACTGAAAAAATAAAGCAAATAAGGCATGGCACTCAGAAT
GTGGGCGTCGTCTACTGCCAATGCTCTTAGAATTTCCTGCGCCTCCAAAA
CTCCTGCATTTGCCCTCTCCAGATGCTTCTCTTCTGTCTTGGATGGGTTG
AAATATGCATCCTCGCATGAATGGGTGAAGCATGAAGGCTCTGTGGCTAC
TGCTGGCATCACTGATCATGCCCAGGATCATCTTGAAGAAGTAGTGTTTG
TGGAGCTGCCAGAAACTGGTGCCTCATTCAAACAAGGCGGCGGCTTCTGG
GTTGTAGAAAGTGTGAAAGCAACCAGTGACGTTAATTCCCCCATTTCTGG
TGAAGTTATTGAGGTTAAC
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